Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1424 82.4 6e-11 >seq1424 Length=2309046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 ||||||||||| || || || || | || ||||| ||||| ||| | ||| ||| | Sbjct 23669 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 23610 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || ||| | ||||| ||||| ||||| |||||| | || || Sbjct 23609 AGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGAC 23550 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || |||||||| || | | || | | || ||| Sbjct 23549 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 23490 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| |||||||| || |||| |||| || | || |||| || Sbjct 23489 AACATTCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGG 23440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864695335610