Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq54 104 2e-17
seq1767 102 6e-17
seq171 86.0 5e-12
>seq54
Length=460634
Score = 104 bits (114), Expect = 2e-17
Identities = 160/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| |||| || || ||||||| | || ||||| ||||||||||| ||||| || |
Sbjct 180545 CCACCCCACAGACATGGCACCAAGGGCAGGGTGGACTCTTTTTGAATATTATAGTCTGAG 180486
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||| || || || |||||||| || | |||| || ||||| || || |||
Sbjct 180485 AGAGTGCAGCCATTCTCCAGCTGTTTGCCCACAAAGATCAGTCGCTGCTGGTCAGGTGGA 180426
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| |||||||| | ||| ||||||| |||| | |||||| | | ||
Sbjct 180425 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCA-CTGGCTGGACC 180367
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || || || ||||| || | ||| || ||||| ||||||||
Sbjct 180366 TTGAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 180320
>seq1767
Length=1785757
Score = 102 bits (112), Expect = 6e-17
Identities = 151/213 (71%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || ||||||||||| || || | | ||| | |||
Sbjct 523803 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACATCCATC 523862
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| | ||||||| ||||| | |||| |||| ||||||| || ||||| || || || ||
Sbjct 523863 TTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTCCTTATC 523922
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || | || |||| || |||||||| | ||
Sbjct 523923 CTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGT 523982
Query 29754 TTTGCCAGTTAA-GGTTTTAACAAATATCTGCA 29785
|| || ||||| |||||| || || |||| ||
Sbjct 523983 CTTCCCTGTTAAGGGTTTTCACGAAAATCTCCA 524015
>seq171
Length=354554
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/209 (70%), Gaps = 7/209 (3%)
Strand=Plus/Minus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| ||||| || ||||||||||| || || | || | ||| || |||||
Sbjct 310996 ATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCAGA----GTACATCCATCTTCCAGTTG 310941
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
||||||||| | ||| |||||||||||| || ||||| | || || | || |||||
Sbjct 310940 CTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTG-AATTT 310882
Query 29703 TTG-TTTGACAGTTTCTA-CAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760
| | || ||| |||||| | | || || |||| || || ||||| || || || ||
Sbjct 310881 TGGCCTTTACATTTTCTATCGTTATCTGAGTGTTCAACCTCGAGAGTGATGGTCTTCCCC 310822
Query 29761 GTTAAGGTTTTAACAAATATCTGCATTTT 29789
| | ||||| | || |||||||| ||
Sbjct 310821 ATAAGAGTTTTTATGAAAATCTGCATCTT 310793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385207509801090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |