Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq54 104 2e-17 seq1767 102 6e-17 seq171 86.0 5e-12 >seq54 Length=460634 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| || || ||||||| | || ||||| ||||||||||| ||||| || | Sbjct 180545 CCACCCCACAGACATGGCACCAAGGGCAGGGTGGACTCTTTTTGAATATTATAGTCTGAG 180486 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| || || || |||||||| || | |||| || ||||| || || ||| Sbjct 180485 AGAGTGCAGCCATTCTCCAGCTGTTTGCCCACAAAGATCAGTCGCTGCTGGTCAGGTGGA 180426 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||||| |||| | |||||| | | || Sbjct 180425 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCA-CTGGCTGGACC 180367 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || ||||| || | ||| || ||||| |||||||| Sbjct 180366 TTGAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 180320 >seq1767 Length=1785757 Score = 102 bits (112), Expect = 6e-17 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | ||| | ||| Sbjct 523803 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACATCCATC 523862 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||||||| ||||| | |||| |||| ||||||| || ||||| || || || || Sbjct 523863 TTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTCCTTATC 523922 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || | || |||| || |||||||| | || Sbjct 523923 CTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGT 523982 Query 29754 TTTGCCAGTTAA-GGTTTTAACAAATATCTGCA 29785 || || ||||| |||||| || || |||| || Sbjct 523983 CTTCCCTGTTAAGGGTTTTCACGAAAATCTCCA 524015 >seq171 Length=354554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/209 (70%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||||||||| || || | || | ||| || ||||| Sbjct 310996 ATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCAGA----GTACATCCATCTTCCAGTTG 310941 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | ||| |||||||||||| || ||||| | || || | || ||||| Sbjct 310940 CTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTG-AATTT 310882 Query 29703 TTG-TTTGACAGTTTCTA-CAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760 | | || ||| |||||| | | || || |||| || || ||||| || || || || Sbjct 310881 TGGCCTTTACATTTTCTATCGTTATCTGAGTGTTCAACCTCGAGAGTGATGGTCTTCCCC 310822 Query 29761 GTTAAGGTTTTAACAAATATCTGCATTTT 29789 | | ||||| | || |||||||| || Sbjct 310821 ATAAGAGTTTTTATGAAAATCTGCATCTT 310793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207509801090