Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2123 199 3e-45 seq2429 125 5e-23 seq2203 116 3e-20 seq558 107 1e-17 seq1991 102 6e-16 seq435 86.0 5e-11 >seq2123 Length=1033990 Score = 199 bits (220), Expect = 3e-45 Identities = 914/1431 (64%), Gaps = 18/1431 (1%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || ||||| |||||||| |||||||| | ||||| || ||||| || ||||| || Sbjct 482975 GGCCGTTACATTGAGAATACCGTTGGCATCGATGTCAAAGGTTACTTCGATCTGAGGAAC 482916 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||||| | ||||| ||||| || || | ||| ||||| ||| || || | Sbjct 482915 TCCTCTAGGTGCAGGAGGGATTCCAGTCAGGTCAAAGCGCCCCAGCAGATTGTTGTCCCT 482856 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | | || ||||| | | ||||| || ||| || |||||||| || Sbjct 482855 CGTCATGGCCCTCTCGCCCTCATACACCTGGATCAATACCCCAGGCTGGTTATCTGAGTA 482796 Query 281605 AGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 ||| || || | |||| | | || || || || | ||| | | ||| | | Sbjct 482795 AGTGGTGAAGA-TCTGTGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTAATTAGGACCG 482737 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | ||| || ||||| || || || | || | |||| ||||| | | | | Sbjct 482736 TCATCACACCCCCGGCTGTCTCCAACCCTAAGGACAAGGGAGCCACATCTAACAAAAGCA 482677 Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 | || | ||||| | | || | | ||| ||||| || | ||||| |||| Sbjct 482676 GGTCCTGTACCTTTTCGGACTTGTCCCCCATCAAAATGGCTGCCTGTACTGCAGCCCCAT 482617 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 281843 | || || || ||||| || || | | | || || | ||||| || | | Sbjct 482616 AGGCCACTGCCTCATCTGGGTTGATGCTCTTGTTGAGATCACGGCCATTAAAGTAGTCCT 482557 Query 281844 AAAGAAGTTGTCTTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 || || ||| | ||||||| || || | || ||||| ||||| ||||| ||||| Sbjct 482556 GCAGCAGCC-TCTGAACCTTAGGGATGCGGGTAGAGCCTCCTACTAAAACAATGTCATGA 482498 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962 | | | |||||||| || | ||| | | | || || || || || ||| | Sbjct 482497 ATTTTAGCTTTATCCATCTTGGCATCACGAAGAGCCTTCTCCACAGGCTCCAGAGTGCCC 482438 Query 281963 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-T 282020 || |||| |||| ||| | || || || ||||| |||| | || | || || | Sbjct 482437 CTGAACAGATCTGCACACAACTCCTCAAACCGGGCTCTGGTAATGG--ACGTGTAGAAGT 482380 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 |||||||||| || | ||||| | ||| | | | ||||| || || || | | Sbjct 482379 CAATTCCTTCAAAAAGTGAATCGATTTCCAAGTTGGCCTGAGTGCTGGATGACAGGGTCC 482320 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT--TTGCTGATTGATTCAA 282138 || || | ||||| || || | || | | | ||| ||| | ||| | | Sbjct 482319 TCTTGGCCCTCTCACAGGCAGTTCGCAGCCGCCTCACAGCTCGCTTGTT--TTGGCTGAT 482262 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 || | || | || |||||||| ||||| ||| | | || || | || ||||| Sbjct 482261 GTCCTTCTTGTGCTTCCTCTTGAACTCTTCCACAAAGTGACTCACCAGTCTGTTGTCAAA 482202 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 || || || ||||| | || | || | || || |||| | |||| ||||| || Sbjct 482201 GTCCTCTCCACCCAAGTGGGTGTCCCCAGCTGTGGCCTTTACCTCAAAAATCCCATCATC 482142 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCA 282317 | | || | | |||||| || || ||||||| |||||| || ||||||| || Sbjct 482141 TATGGTCAGGATGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGTACATGTCG 482082 Query 282318 TT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 | || || | || ||| | | ||| ||||| |||| |||||||| || |||||||| Sbjct 482081 CTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCTGTGGGTTCATTG 482024 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 |||||||| || ||||| ||||| ||||| |||||||| || ||||| || | ||| Sbjct 482023 ATAATTCTTAACACATTGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGTTGA 481964 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 || || || ||||| || || ||||| || || |||| || || | || | | || Sbjct 481963 GAGTCATTGAAATAGGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCTAAAAAA 481904 Query 282497 GCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATAT 282556 || || || | ||||||||| ||| | ||| || || |||| ||| || | | | Sbjct 481903 GCCTCAGCAGTCTCCTTCATTTTAGTTAGTACCATAGAAGAGATTTCTTCAGG-GTAGAA 481845 Query 282557 TGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 282615 |||| | || || || || || | | || || || |||| || || Sbjct 481844 AGCTTTTTTCTCCCCTTTGTAGGACACCAGCACCTTAGGCTTGCCTCCTTCATTGATTAC 481785 Query 282616 TTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 282675 || ||| |||||| ||||||||||||||| || | |||||||| | ||| ||||| Sbjct 481784 TTGAAAAGGCCAAAGTTTCATATCTGATTGTACTACAGGATCATTAAATTTTCTGCCAAT 481725 Query 282676 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGC 282735 | ||||| |||||||| | ||| || ||||| | || | || | ||||| || Sbjct 481724 CAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCGGC 481665 Query 282736 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 282795 ||| || || || | || || || || || | || || || || ||||| || || Sbjct 481664 ATCCCCGATGAGCCGCTCAGTATCGGTGAAGGCCACGTAGCTAGGGGTGGTGCGGTTGCC 481605 Query 282796 TTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || || || || || || || || |||| || | || || ||||| Sbjct 481604 CTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAACACCCCCACACA 481554 >seq2429 Length=579621 Score = 125 bits (138), Expect = 5e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | ||||| |||| ||||||||||||||||||||| |||||||| | ||| Sbjct 350460 TTTTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATAATTCTAAGTACA 350519 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 350520 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGCCGCTGAGAGTCATTGAAATAA 350579 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | || |||| ||| || Sbjct 350580 GCAGGTACTGTGACCACAGCATTTGTAAC 350608 Score = 120 bits (132), Expect = 2e-21 Identities = 363/552 (66%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || |||||||||||||| || | | | ||| | || ||| |||||||| Sbjct 349814 GCACCATAAGCGACAGCTTCATCAGGGTTGATGCTCTTATTCAATTCTTTTCCATTGAAG 349873 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | ||||||| ||| | |||||| ||||| | || || || || | ||||| Sbjct 349874 AAGTCCTGTAGAAGTT-TCTGAATCTTAGGGATACGGGTAGAACCACCCACCAGGACAAT 349932 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| || || || || || | |||| | ||||||| || || || || Sbjct 349933 ATCATGGATCTGGGACTTGTCGAGCTTCGCATCCCGAAGGGCTTTTTCTACAGGGTCCAG 349992 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | || | ||| | | | |||||| ||| || | ||| | || | || Sbjct 349993 GGTGCCACGGAAAAGGTCAGCATTCAATTCTTCAAATCGGGCACGAGTGATAGAGGTATA 350052 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || |||||||| | | ||||||| ||||| | | || || ||||| || Sbjct 350053 GAAGTCGATTCCTTCATAGAGCGAATCAATCTCAATACTGGCCTGGGTACTGGAAGAAAG 350112 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC-GTAAG-GCTTTTG--CTGATT 282131 | ||| |||||||||||||| || || | || | || | || |||||| || | | Sbjct 350113 GGTACGCTTAGCACGTTCACAAGCAGTGCGGAGACGTCTGACAGCCCTTTTGTTCTCACT 350172 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 ||| || | |||| || | ||| || ||| ||| | | ||| | || | || Sbjct 350173 GAT----GTCCTTCTTATGCTTGCGCTTAAACTCTGCAATAAA--ATGGTTGACCATTCG 350226 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||| ||||| || || || | || | || | |||| | | |||| ||||| Sbjct 350227 GTTGTCAAAGTCTTCTCCACCTAAGTGGGTGTCCCCAGCTGTAGATTTCACTTCGAAAAT 350286 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||||||||| | | || | |||||| || ||||| |||| ||||| || || Sbjct 350287 TCCATCTTCAATTGTGAGAATCGACACATCAAAAGTGCCACCTCCCAAGTCAAAGATCAG 350346 Query 282310 TACATTCATTTC 282321 ||||| |||| Sbjct 350347 CACATTTCTTTC 350358 >seq2203 Length=850018 Score = 116 bits (128), Expect = 3e-20 Identities = 352/534 (66%), Gaps = 11/534 (2%) Strand=Plus/Plus Query 282347 TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATT 282406 || |||| ||||||||||||||| ||||| |||||||| | ||||| ||||||||||| Sbjct 409903 TAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTAAGTACATTGAGACCAGCAATA 409962 Query 282407 CTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATA 282466 |||| |||||||| ||||| || | || || || || || || ||||| || || || Sbjct 409963 ATTCCAGCATCTTTGGTGGCCTGCCACTGAGAGTCATTGAAGTAAGCAGGTACTGTTATG 410022 Query 282467 ACGGCATCTGTTACTTCTTTTCC-AATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAA 282525 || |||| || || | | |||| || || || ||| ||| ||| | || | || Sbjct 410023 ACAGCATTTG-TAATGGTCTTCCAAAGGTAGGCTTCTGCAATTTCCTTCGTCTTTGTCAA 410081 Query 282526 AATCATTGATGAAATTTGTTCTGGA---GAATATTGCTTGGATTCATTTTGATATGATAC 282582 || ||| ||||| | | |||||| ||| || ||| | |||| ||| ||| Sbjct 410082 AACCATAGATGACACCTCCTCTGGATAGGAACTTT--TTGTCTCTCCTTTG-TATTCTAC 410138 Query 282583 TTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGA 282642 || | || || | || ||| | || | || || | || |||||||| || Sbjct 410139 TT-GGCCTTGGGCTTGCCAGCATTATTCACCACCATGAAGGGGCGATGGTTCATATCAGA 410197 Query 282643 TTGAACACTTTGGTCATTAAAATCTCTACCAATT-AATCGTTTTGCATCAAAAATAGTAT 282701 ||| ||| ||| | |||||| | | ||| | |||| ||||||||| | | Sbjct 410198 TTGGACAACAGTATCA-TCAAATCTATGTCTATTCAGGTGTTTGGCATCAAAAGCCATGT 410256 Query 282702 TGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTG 282761 |||| || | | ||| |||| | || || ||||| || |||| || || | || | Sbjct 410257 TGGTGGGGGTCATTGCCACTTGTTTCTTTGCAGCATCACCTATCAATTGCTCCATATCAG 410316 Query 282762 TAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTT 282821 |||| | || || |||| | || | || | | || || ||||| ||||| |||| Sbjct 410317 TAAAGTACACCTAACTTGGAATGGTTTGGTTTTCCTAATTGTTGGCAATTATTTCCACTT 410376 Query 282822 TACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 | | || | ||||| |||||| |||| || || | |||||| |||| Sbjct 410377 CTCTACGCTGGAAGACACCCACACAAGAGTAAGTGGTGCCGAGATCAATGCCAA 410430 >seq558 Length=2832783 Score = 107 bits (118), Expect = 1e-17 Identities = 207/300 (69%), Gaps = 18/300 (6%) Strand=Plus/Minus Query 281257 AGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCT 281314 || |||| |||||||||||||| ||| ||||| || ||| || ||| |||||| | Sbjct 937524 AGCATAACTTTCTAATTCATTTCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTATCTTCC 937467 Query 281315 TCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCT 281370 || |||| | || ||| || ||| ||| || || || | || |||| || | Sbjct 937466 TCAGCAAACTTTTCAGCATCATTAACCATCCTTTCGATCTCTTCAGGTGTCAGGCGATTT 937407 Query 281371 TCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGC 281427 | ||| ||| ||||| || || || || |||||| ||| ||| || | || Sbjct 937406 T----GATCATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGC 937354 Query 281428 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 281487 ||||| |||||| ||||| |||| | ||||| ||||||||||| || ||||| || Sbjct 937353 TGTCACTCGAAGAATGCCATTCACATCTATCTCAAAAGTGACTTCAATCTGTGGGACTCC 937294 Query 281488 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 | ||||||| ||||| || || || ||| ||||||||| || ||| ||||| || Sbjct 937293 ACGGGGAGCAGGAGGGATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCTTTTGT 937234 >seq1991 Length=4069235 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || |||| |||||||| ||||||||||| || ||| | || |||||| | Sbjct 1615253 TGTACACTTATCCTGACCGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 1615312 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| |||||| ||||| |||||||| |||||||||||| | | |||||| | Sbjct 1615313 GTGGTTGGGAGAGATAGATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 1615372 Query 400417 GATGCT 400422 || ||| Sbjct 1615373 GAAGCT 1615378 >seq435 Length=2947834 Score = 86.0 bits (94), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | || || Sbjct 1511763 TGTCGTAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCAT 1511822 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || || ||||| || || ||||||||||| || || Sbjct 1511823 TCATTATGGTGCTCCTAAGGAAATGGAGTCATATTACCAGGAGATTGGTAGAGCTGGCCG 1511882 Query 131296 TGATGGA 131302 |||||| Sbjct 1511883 CGATGGA 1511889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740508151522740