Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1424 176 9e-39 seq2363 141 2e-28 seq1767 129 1e-24 seq171 116 7e-21 seq2069 104 5e-17 seq1689 104 5e-17 seq2080 100 6e-16 seq1958 100 6e-16 seq1 87.8 4e-12 seq2435 84.2 4e-11 seq1704 84.2 4e-11 >seq1424 Length=2309046 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| |||||| || | ||||| || || || ||||| || || ||||||| Sbjct 23438 TACCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAG 23497 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || ||||||| Sbjct 23498 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGAG 23557 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || |||||||| || || || ||| | ||||| | Sbjct 23558 GGATGCCTTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGTTCCA 23617 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || || |||||||| |||| ||||| || || || |||||| Sbjct 23618 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 23667 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | ||||| || || |||||||| || || |||||||| Sbjct 22756 CCACCCCTCAGACGTAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 22815 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || ||||| || |||||||| || || || || |||||||| Sbjct 22816 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 22875 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| ||||| || ||| | ||||| ||| Sbjct 22876 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 22935 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 22936 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 22982 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | ||||| || || |||||||| || || || |||| Sbjct 22982 TACCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAG 23041 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || ||||| || |||||||| || || || || || |||| Sbjct 23042 AAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAG 23101 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || ||||| ||||| || ||| | ||||| | Sbjct 23102 GAATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCA 23161 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || |||||||| |||| ||||| || || |||||||| Sbjct 23162 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23210 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | ||||| || || || ||||| || || ||||||| Sbjct 23210 TACCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAG 23269 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || ||||| || |||||||| || || || || ||||| | Sbjct 23270 AAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGG 23329 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || ||||| ||||| || ||| | || || | Sbjct 23330 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCA 23389 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| ||||| || || |||||||| Sbjct 23390 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23438 >seq2363 Length=646923 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||||||| || || || | |||||| || || || ||||| || || || || || Sbjct 187906 ACCTCCTCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 187847 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | |||||||| || || ||||| |||||||| || || || || || || || Sbjct 187846 CAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 187787 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| || || || || || || || || | || || || Sbjct 187786 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 187727 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || |||| ||||| || || |||||||| Sbjct 187726 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187679 >seq1767 Length=1785757 Score = 129 bits (142), Expect = 1e-24 Identities = 151/203 (74%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || |||||||| || || || || || || ||||| | | | || ||||| | |||| Sbjct 523813 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAATTGT 523872 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| |||||| | ||||| ||||| |||||||||||||| || ||||| Sbjct 523873 TTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 523932 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||| | ||||| || || | ||| | ||||| ||||| Sbjct 523933 GCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGTCTTCCCTGTT 523992 Query 82788 AA-CGTCTTTACAAATATCTGCA 82809 || || || || || |||| || Sbjct 523993 AAGGGTTTTCACGAAAATCTCCA 524015 >seq171 Length=354554 Score = 116 bits (128), Expect = 7e-21 Identities = 124/160 (78%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||| | |||||||| ||||| ||||| ||| ||||| Sbjct 310954 CCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCC 310895 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCG-TATCATTAG-GTTCTACTTCCAAAG 82770 |||| ||||| || || ||||||||||| |||| |||| | || |||| || || | || Sbjct 310894 TTATTCTGAATTTTGGCCTTTACATTTTCTATCGTTATC-TGAGTGTTCAACCTCGAGAG 310836 Query 82771 TTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || | | || |||| || |||||||| Sbjct 310835 TGATGGTCTTCCCCATAAGAGTTTTTATGAAAATCTGCAT 310796 >seq2069 Length=3899032 Score = 104 bits (114), Expect = 5e-17 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 82605 AAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664 ||| | |||||||| ||||| | || | || |||| | | | || ||||| ||| Sbjct 1248463 AAGAGAAGAGTAGACTCTTTTT---TAATGTAGCCAGACAAAGTATGTCCATCTTCCAGT 1248519 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || || |||||| | |||||||| ||||| ||||| |||||||||||| | | ||| Sbjct 1248520 TGCTTGCCGGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTACCCTAGATC 1248579 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || ||||||||| | | || || ||||||||| || | || || ||||| || Sbjct 1248580 TTGGCCTTTACATTTGCTTTTGTGTCCAAAGGTTCTACCTCAAGAGCGATGGTCTTCCCC 1248639 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| |||| ||| Sbjct 1248640 ATATGGGTTTTCACAAAAATCTTCAT 1248665 >seq1689 Length=2064527 Score = 104 bits (114), Expect = 5e-17 Identities = 145/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || | |||||||| | | || ||||| ||||| Sbjct 174769 TGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGGTATGTCCATCTTCCAGTTGC 174828 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| |||| ||||| ||||||||||||| || ||||| Sbjct 174829 TTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTCCTTCCTTATTCTGGATCTTG 174888 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC-TGT 82786 || |||| || | | || ||||| | ||| || || | ||| || ||||| || ||| Sbjct 174889 GCCTTTATATCTCCTATTGTATCCAAGGCTTCAACCTCGAGAGTAATGGTCTTCCCTTGT 174948 Query 82787 CAACGTCTTTACAAATATCTGC 82808 | || || | || |||||| Sbjct 174949 AAGGGTTTTCAAGAAAATCTGC 174970 >seq2080 Length=3818131 Score = 100 bits (110), Expect = 6e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || | || ||||||||| | || ||||| ||||| Sbjct 1111775 TGAAGAGTGGACTCCTTTTGAATGTCGTAGTCAGATAGAGTATGTCCATCTTCCAGTTGC 1111716 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || ||||| ||||| ||||| |||||||| ||||| || ||||| Sbjct 1111715 TTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTTG 1111656 Query 82728 GCTTTTACATTTT 82740 || |||| || || Sbjct 1111655 GCCTTTATATATT 1111643 >seq1958 Length=4156293 Score = 100 bits (110), Expect = 6e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| |||| || ||||||||||| |||||||| |||| |||| |||||||||||||| Sbjct 633083 TTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCCGATCAAGAGGAATTCCTTCCTTATC 633024 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || | ||| || | ||||||||| || ||||| ||||| | | | ||| || || Sbjct 633023 CTGGAACTTGGCCTCTACATTTTCTATTGTATCCGAGGGTTCAGCCTAGAGAGTGATGGT 632964 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | || || || || |||||||| Sbjct 632963 CTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 632931 >seq1 Length=8996366 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || |||||| | || || || || | || ||||| | | | || ||||| | ||| Sbjct 4848814 TGAAGAGTAAACTCCTTTTGAATGTGGTAGTCAGACAAGGTACACCCATCTTCCAATTGC 4848755 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | ||| || || | ||| ||||||||||| || || ||||| Sbjct 4848754 TTGCCAGCAAAGATCAATACTTGCTGGTCAGAAGGAATTCCTTCCTTTTCCTGGATCTTG 4848695 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||| | || ||| | || | | | | ||||| || || Sbjct 4848694 GCCTTTACATTTTCTATTGTAACCAAAGCTTCAATCTCGAGAATGACGGTCTTTCCGGTA 4848635 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || | || |||||||| Sbjct 4848634 AGAGTTTTCAAGAAAATCTGCAT 4848612 >seq2435 Length=3389772 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| ||||| || || ||||| || |||||||| || ||| | || || || || Sbjct 1634048 CCCTCCTTGTCTTGGATTTTAGCTTTGACGTTTTCAATGGTGTCACTGGGCTCGACCTCG 1634107 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||||||||||| ||||| ||||| |||||||| Sbjct 1634108 AGTGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1634151 >seq1704 Length=2019467 Score = 84.2 bits (92), Expect = 4e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 59870 GATAAACGTGTAGACAATTGGCTGTTAATGAATTCACCTATTCCTACAATATGTATAAGT 59929 |||||||||||||| ||||||| | ||| | || || | |||||| | ||||||||| Sbjct 1830416 GATAAACGTGTAGAAAATTGGCCTCTGATGCAGTCCCCCCTGCCTACACTTTGTATAAGT 1830475 Query 59930 ACTTTGTATCTAATTATTGTCTGGTTAGGACCTAAATGGATGAAAACTAGAAACGCGTTT 59989 ||| | ||||| | |||| ||| | || || ||||||||||| | || | || ||| Sbjct 1830476 ACTCTTTATCTCCTGTTTGTGTGGCTGGGTCCAAAATGGATGAAGGCCCGAGAAGCTTTT 1830535 Query 59990 AATATCAGATGGTTGTTGGTCTTATATAATTTTTCTATGGTATTTCTAAACTTTTATAT 60048 | || | | || | | | ||||||||| ||||| || || ||| ||| ||| Sbjct 1830536 CAGATGCGCTTAGTGCTCATTCTCTATAATTTTGGGATGGTTTTGCTTAACCTTTTTAT 1830594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981795876644110