Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq1837 268 1e-66
seq1719 179 4e-40
seq391 140 4e-28
>seq1837
Length=1607474
Score = 268 bits (296), Expect = 1e-66
Identities = 584/870 (67%), Gaps = 17/870 (2%)
Strand=Plus/Minus
Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180
|| ||||| || || || | ||| ||| || | || |||||| || | || || | |
Sbjct 104297 TCAAACTTATTGGCAAATAAGTGGTGC---TTGTGCAGTATCCAGTTCAAGTCACCTGCT 104241
Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240
|| || || |||||||| || || || || || |||| || || || |||| || | |
Sbjct 104240 CCAAAAACACACACGGAGCGTACATGGACACCATTGCAGGGTGGGTAGGGGGCGCCCTTG 104181
Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300
||||| || || |||| |||||||| || ||||||| ||| || ||||||||||
Sbjct 104180 GAAACATCGCCTTCAAAGTACTGCCACTTGACAAACCTAGCGATTGCAAGCATGTCGGAC 104121
Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360
|||| ||||| || | | |||| | || || || | || | ||||| | |||
Sbjct 104120 ATGTCATACTTATAGTTTAAGGGCAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAGTG 104061
Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420
||||| || | || ||||| || ||||| || || | ||||||||| |||| ||
Sbjct 104060 GCCCAGAGATACTCATCTGGGCTGTACGTGTCTTTTGCCCACTCCATAAACTTTTGGATT 104001
Query 162421 GTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCA 162480
||| || | ||| | ||| || || ||| | || | || || || || ||
Sbjct 104000 CTTTCATTCTCTAGTACGTACTCCACATAATTCCTACTGACCACGAAATAGGCACTGCCT 103941
Query 162481 GAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATT 162540
||||||| ||| | | ||||||| || |||||| || ||||| | | ||
Sbjct 103940 GAAAACAGAGGTGTTTCAAGAGGAGGGTGCATTTTGTCAGTCCCTGTGTTTGTCAGCTTT 103881
Query 162541 CCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTG 162596
|| | || || ||| | ||| ||||||| | || ||| ||| | | |
Sbjct 103880 CCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTATTTTATTGGATGGCATTTT 103825
Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656
|| || ||||| |||| ||| || | ||| || | | || || || || ||
Sbjct 103824 CTCAGTTTCTAGGTTGTTTTCTCCCATTAATGACTTGAGTTTCCTGACAATTTCCAGGTT 103765
Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716
||| |||| ||||| || | || || ||||| || | || ||||| || | || |
Sbjct 103764 GGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCAT 103705
Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776
|| ||| || ||||| | |||||| || ||||||||||| |||||||| || || |||||
Sbjct 103704 TCTGTAGAGGTCCTGCATACAGTTGAGGTCGGCCTGGACCCGACTCCATGATGCATACAC 103645
Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836
|| ||||||| | | |||| ||||||||||| | |||||| || | || || |||||
Sbjct 103644 CACACTCTCCAGCTGACTGGCCACAAAGACATTATTGAAACAGGATGCAATGCCAATCAC 103585
Query 162837 GGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893
| ||| | || ||| || | ||| | || || || | ||| || | ||||||
Sbjct 103584 CG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTG 103528
Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953
||| |||||||||||||| | || || | ||| || || || || || ||||| ||
Sbjct 103527 AGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTAT 103468
Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983
||||| ||||| || ||||| ||||| ||
Sbjct 103467 GGAATATGCTATTGGAAACTCTGCCTCTTC 103438
>seq1719
Length=1953405
Score = 179 bits (198), Expect = 4e-40
Identities = 233/322 (72%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || ||||| | | || || ||||| || || ||||||||||| || | |
Sbjct 1467515 CAAAGAGGGTGAGACATGCTATTCCTGAGATTTTCCCAGAACCAAAAGTATTGAAGAGGC 1467574
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| || || || |||| || || ||||| || || | || || | ||
Sbjct 1467575 ACTTGTAACACCCCTCATCATCCAACGTAGTATTCCAGAAGGTAATGGTTGAGCTCTGGA 1467634
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || | || ||||| | | ||||| || | || |||||| ||||| || || |
Sbjct 1467635 GTCCCAGCTCAGTGATGTTTATCTTATCCTTATAGGCAGTCTGGACCACAACTCCATGGT 1467694
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| |||||| || ||||||||||| ||||| ||| || || |||||||| || || |
Sbjct 1467695 TCTTGCTGAAGGTAGCCATGTTTTCTGGGCTTACAGCTTTGATTTTCTGCCATGTCACAA 1467754
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| |||||||| | | |||| |||||||||| ||| |||||||||||||||| | |
Sbjct 1467755 TCAAAACTTCATGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCT 1467814
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||||| ||| | || |||||
Sbjct 1467815 CTCTTTCATCTCGGGTCACCAC 1467836
>seq391
Length=2997115
Score = 140 bits (154), Expect = 4e-28
Identities = 436/664 (66%), Gaps = 17/664 (3%)
Strand=Plus/Plus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| |||| | || || | | |
Sbjct 521399 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 521458
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| ||||| || | ||| | || | ||||
Sbjct 521459 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATAAATGAATCTGCTGGAATATAAT 521518
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
|||| || || ||||| |||| || || || || ||||| | || |||| || ||
Sbjct 521519 TTTCATAGTTTTCTCTAGATGGCCCCAGAACAATAGGTACAGAGCCAGCCAGAAAAGCAT 521578
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || || |||| | ||||| || || | ||||||||||
Sbjct 521579 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCGAAGGAAAGATAGAATT 521638
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
| || | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 521639 TGCAAGTAGATATGGTA--GGAATTAAATTTTTATCATTCACATATTCTCCAAATGCTTG 521696
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || || ||| || | ||| ||| || || || || | |
Sbjct 521697 CCCATAAGTATGGATTTCAATACTTTTGCTTAACTCATTGTAATA-CTTGACCCTGGCAT 521755
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || ||||||||||| ||||| |||||||| || ||
Sbjct 521756 GCTCAGGGTTCCAGTTACTTACAACCCAGCAAACCAACTT-CTCTTTGCTTGGCAC---- 521810
Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | || || | | | || | ||| | | ||||| ||||| || ||||| ||
Sbjct 521811 TTCAAACACGAACGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 521870
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419
|||||| | || || | || || ||||| || | || |||| || |||| |||
Sbjct 521871 GTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGATGCTCAATACCACTCTTTTG--GGGC 521928
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479
||| | | || ||||| || |||||||| ||||| || || || | ||| |||| | |
Sbjct 521929 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAACGGTGGCCTGGCCTGC 521988
Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539
||||| | || |||| ||| || |||| ||| || | | || |||| | |
Sbjct 521989 TGAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGAGAT 522048
Query 177540 TTGT 177543
||||
Sbjct 522049 TTGT 522052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578413996304000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |