Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1837 268 1e-66 seq1719 179 4e-40 seq391 140 4e-28 >seq1837 Length=1607474 Score = 268 bits (296), Expect = 1e-66 Identities = 584/870 (67%), Gaps = 17/870 (2%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || || | ||| ||| || | || |||||| || | || || | | Sbjct 104297 TCAAACTTATTGGCAAATAAGTGGTGC---TTGTGCAGTATCCAGTTCAAGTCACCTGCT 104241 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || |||||||| || || || || || |||| || || || |||| || | | Sbjct 104240 CCAAAAACACACACGGAGCGTACATGGACACCATTGCAGGGTGGGTAGGGGGCGCCCTTG 104181 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||||| || || |||| |||||||| || ||||||| ||| || |||||||||| Sbjct 104180 GAAACATCGCCTTCAAAGTACTGCCACTTGACAAACCTAGCGATTGCAAGCATGTCGGAC 104121 Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360 |||| ||||| || | | |||| | || || || | || | ||||| | ||| Sbjct 104120 ATGTCATACTTATAGTTTAAGGGCAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAGTG 104061 Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420 ||||| || | || ||||| || ||||| || || | ||||||||| |||| || Sbjct 104060 GCCCAGAGATACTCATCTGGGCTGTACGTGTCTTTTGCCCACTCCATAAACTTTTGGATT 104001 Query 162421 GTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCA 162480 ||| || | ||| | ||| || || ||| | || | || || || || || Sbjct 104000 CTTTCATTCTCTAGTACGTACTCCACATAATTCCTACTGACCACGAAATAGGCACTGCCT 103941 Query 162481 GAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATT 162540 ||||||| ||| | | ||||||| || |||||| || ||||| | | || Sbjct 103940 GAAAACAGAGGTGTTTCAAGAGGAGGGTGCATTTTGTCAGTCCCTGTGTTTGTCAGCTTT 103881 Query 162541 CCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTG 162596 || | || || ||| | ||| ||||||| | || ||| ||| | | | Sbjct 103880 CCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTATTTTATTGGATGGCATTTT 103825 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || || ||||| |||| ||| || | ||| || | | || || || || || Sbjct 103824 CTCAGTTTCTAGGTTGTTTTCTCCCATTAATGACTTGAGTTTCCTGACAATTTCCAGGTT 103765 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 ||| |||| ||||| || | || || ||||| || | || ||||| || | || | Sbjct 103764 GGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCAT 103705 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || ||| || ||||| | |||||| || ||||||||||| |||||||| || || ||||| Sbjct 103704 TCTGTAGAGGTCCTGCATACAGTTGAGGTCGGCCTGGACCCGACTCCATGATGCATACAC 103645 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || ||||||| | | |||| ||||||||||| | |||||| || | || || ||||| Sbjct 103644 CACACTCTCCAGCTGACTGGCCACAAAGACATTATTGAAACAGGATGCAATGCCAATCAC 103585 Query 162837 GGCCAGTGAGAA---CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | ||| | || ||| || | ||| | || || || | ||| || | |||||| Sbjct 103584 CG-CAGCCAAAAAGGAATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTG 103528 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| |||||||||||||| | || || | ||| || || || || || ||||| || Sbjct 103527 AGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTAT 103468 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| ||||| || ||||| ||||| || Sbjct 103467 GGAATATGCTATTGGAAACTCTGCCTCTTC 103438 >seq1719 Length=1953405 Score = 179 bits (198), Expect = 4e-40 Identities = 233/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || ||||| | | || || ||||| || || ||||||||||| || | | Sbjct 1467515 CAAAGAGGGTGAGACATGCTATTCCTGAGATTTTCCCAGAACCAAAAGTATTGAAGAGGC 1467574 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || || |||| || || ||||| || || | || || | || Sbjct 1467575 ACTTGTAACACCCCTCATCATCCAACGTAGTATTCCAGAAGGTAATGGTTGAGCTCTGGA 1467634 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||| | | ||||| || | || |||||| ||||| || || | Sbjct 1467635 GTCCCAGCTCAGTGATGTTTATCTTATCCTTATAGGCAGTCTGGACCACAACTCCATGGT 1467694 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| || ||||||||||| ||||| ||| || || |||||||| || || | Sbjct 1467695 TCTTGCTGAAGGTAGCCATGTTTTCTGGGCTTACAGCTTTGATTTTCTGCCATGTCACAA 1467754 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| |||||||||| ||| |||||||||||||||| | | Sbjct 1467755 TCAAAACTTCATGGGAAGTTTCCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCT 1467814 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| ||| | || ||||| Sbjct 1467815 CTCTTTCATCTCGGGTCACCAC 1467836 >seq391 Length=2997115 Score = 140 bits (154), Expect = 4e-28 Identities = 436/664 (66%), Gaps = 17/664 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 521399 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 521458 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| ||||| || | ||| | || | |||| Sbjct 521459 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATAAATGAATCTGCTGGAATATAAT 521518 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 |||| || || ||||| |||| || || || || ||||| | || |||| || || Sbjct 521519 TTTCATAGTTTTCTCTAGATGGCCCCAGAACAATAGGTACAGAGCCAGCCAGAAAAGCAT 521578 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| || || | |||||||||| Sbjct 521579 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCGAAGGAAAGATAGAATT 521638 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 521639 TGCAAGTAGATATGGTA--GGAATTAAATTTTTATCATTCACATATTCTCCAAATGCTTG 521696 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || | ||| ||| || || || || | | Sbjct 521697 CCCATAAGTATGGATTTCAATACTTTTGCTTAACTCATTGTAATA-CTTGACCCTGGCAT 521755 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||||||||| ||||| |||||||| || || Sbjct 521756 GCTCAGGGTTCCAGTTACTTACAACCCAGCAAACCAACTT-CTCTTTGCTTGGCAC---- 521810 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 521811 TTCAAACACGAACGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 521870 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 |||||| | || || | || || ||||| || | || |||| || |||| ||| Sbjct 521871 GTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGATGCTCAATACCACTCTTTTG--GGGC 521928 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | | || ||||| || |||||||| ||||| || || || | ||| |||| | | Sbjct 521929 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAACGGTGGCCTGGCCTGC 521988 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| ||| || |||| ||| || | | || |||| | | Sbjct 521989 TGAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGAGAT 522048 Query 177540 TTGT 177543 |||| Sbjct 522049 TTGT 522052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578413996304000