Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2363 105 4e-18 seq1424 100 2e-16 seq1935 84.2 1e-11 >seq2363 Length=646923 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| |||||||| || | |||| || || ||| ||| || || |||||||| |||| Sbjct 187907 CACCTCCTCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 187848 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| |||| |||| || ||||||||||| |||| | |||||| || | | Sbjct 187847 ACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 187788 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || | | || | || | ||||||||| | ||| Sbjct 187787 GGATGCCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCC 187729 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| || | || || || ||||||||||| Sbjct 187728 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187679 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 186669 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 186610 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || ||||||||||| |||| | |||||| || | || Sbjct 186609 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186550 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | || | ||||||||| | ||||| Sbjct 186549 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 186491 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 186490 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186443 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 187116 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 187057 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || ||||||||||| |||| | |||||| || | || Sbjct 187056 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186997 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | || | ||||||||| | ||||| Sbjct 186996 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 186938 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 186937 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186890 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || || ||| || || |||||||| ||||| Sbjct 187677 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 187618 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || ||||||||||| ||||| | |||||| || | || Sbjct 187617 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 187558 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | || | ||||||||| | ||||| Sbjct 187557 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 187499 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 187498 CTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187451 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 186441 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 186382 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || ||||||||||| |||| | |||||| || | || Sbjct 186381 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186322 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | || | ||||||||| | ||||| Sbjct 186321 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 186263 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || | || | || || || ||||||||||| || Sbjct 186262 CTCCAGGGTGATGGTCTTCCGCGTCAGGGTCTTCACGAAGATCTGCATTGT 186212 Score = 86.0 bits (94), Expect = 4e-12 Identities = 154/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 33530 TCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGC 33589 ||| ||| | |||| || || ||| ||| || || |||||||| ||||| || |||| Sbjct 186889 TCAGACGCAGGACCAGGTGCAGGGTGA-CTCCTTCTGGATGTTGTAGTCGGACAGGGTGC 186831 Query 33590 GTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTT 33649 | |||| |||| || ||||||||||| |||| | |||||| || | || | || | Sbjct 186830 GGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCT 186771 Query 33650 CTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACC 33708 | ||||| || || | | || | || | ||||||||| | ||||| || | Sbjct 186770 CCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGG 186712 Query 33709 GTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || ||||| || | || || || ||||||||||| Sbjct 186711 GTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186671 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| ||||| || ||||| |||| |||| || Sbjct 187320 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGC 187261 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| |||| | |||||| || | || | || || ||||| || || Sbjct 187260 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT- 187202 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | || | ||||||||| | ||||| || | ||||| || ||||| || Sbjct 187201 GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGT 187142 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 187141 CAGGGTCTTCACGAAGATCTGCAT 187118 >seq1424 Length=2309046 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||||| |||| ||| || || |||||| || ||||||||||| || Sbjct 22756 CCACCCCTCAGACGTAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 22815 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| || | | |||||| ||| | || Sbjct 22816 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 22875 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || ||| |||| || | |||||| || | |||||| Sbjct 22876 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCACTGGGTTCCAC 22934 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || || ||||||||| Sbjct 22935 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATA 22983 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| | |||| ||| || || |||||| || |||||||| || || Sbjct 22983 ACCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGA 23042 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||||| || ||||| || | | |||||| || | || Sbjct 23043 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 23102 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||| || || || || |||| ||| ||| |||||| || | ||||| Sbjct 23103 AATACCTTCCTTATCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGTTCCA 23161 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 23162 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 23211 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| | |||| ||| || || ||| || || ||||||||||| || Sbjct 23211 ACCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGA 23270 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||||| || ||||| || | | |||||| ||| | || Sbjct 23271 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 23330 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| |||| || | |||||| |||| |||| Sbjct 23331 GATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCACTTGGCTCCA 23389 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 23390 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 23439 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | |||| ||| || || ||| || || ||||||||||| || Sbjct 23439 ACCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGA 23498 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| ||| | || Sbjct 23499 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGG 23558 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || | | |||| || | |||||| || | ||||| Sbjct 23559 GATGCCTTCCTTATCCTGGATCTT-GGCCTTTACATTCTCGATGGTGTCACTGGGTTCCA 23617 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || || ||||| ||||| Sbjct 23618 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 23666 >seq1935 Length=6884337 Score = 84.2 bits (92), Expect = 1e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||||||||| || ||||| || ||||| ||||| | || || Sbjct 3241593 CACCAAGTGCAG-GTGGACTCTTTTTGGATATTGTACTCTGAGAGAGTGCGGCCATCCTC 3241651 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 || ||||| ||||||||||||| ||||||||| Sbjct 3241652 CAGCTGTTTGCCGGCAAAAATCAGACGCTGCTG 3241684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328694024860800