Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1719 260 2e-64 seq1989 147 3e-30 seq2337 143 3e-29 seq1960 125 8e-24 seq1013 123 3e-23 seq2095 96.9 4e-15 >seq1719 Length=1953405 Score = 260 bits (288), Expect = 2e-64 Identities = 249/319 (78%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||| ||||| || | |||||||||||| || || ||| | |||||| ||| Sbjct 1467836 GTGGTGACCCGAGATGAAAGAGAGCTGCTGAACACACCTGCTTCCTTACGATGCTCTCTG 1467777 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | ||||| || || || ||||||| || |||||||||||||| | | ||||| Sbjct 1467776 GAAACTTCCCATGAAGTTTTGATTGTGACATGGCAGAAAATCAAAGCTGTAAGCCCAGAA 1467717 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| || || ||||| |||| || || ||||||||| | || |||||||| ||| Sbjct 1467716 AACATGGCTACCTTCAGCAAGAACCATGGAGTTGTGGTCCAGACTGCCTATAAGGATAAG 1467657 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| |||| |||||||| | ||||||||| || || |||||||| || || Sbjct 1467656 ATAAACATCACTGAGCTGGGACTCCAGAGCTCAACCATTACCTTCTGGAATACTACGTTG 1467597 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||||||| ||||| |||||||| || || ||||| |||||||||||||| || Sbjct 1467596 GATGATGAGGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAAATCTCAGGA 1467537 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | || || |||||||||| Sbjct 1467536 ATAGCATGTCTCACCCTCT 1467518 Score = 212 bits (234), Expect = 7e-50 Identities = 213/277 (77%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 ||||||||||| || || || | |||||||| ||||| |||||||| || ||||| ||| Sbjct 1465218 GTGCAGCCCACAGTATTCCTTAACTATAAATTCTTTGAAGACCACCTAAATATCACTTGT 1465159 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 |||||||||||||| || | ||| ||| | |||||| | || ||||||| ||| || Sbjct 1465158 TCTGCCAATGCCCGACCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGAATGGAC 1465099 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| |||| || || || ||||| || || ||||| |||||||| ||||| Sbjct 1465098 AACAGTACTGAGATTCTCTCACACTCCAATGGGACCACATCTGTCACCAGTGTCCTCCAG 1465039 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || || |||||||| ||||| |||| |||||||| |||||||| ||| ||| ||||| Sbjct 1465038 GTCAAGGACCCCAAAAGTCAAATGGGGAAGGAGGTAATCTGCCAGGTGCTGCATCTGGGG 1464979 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| ||| | ||||| | ||| |||| Sbjct 1464978 ACTGTGGTCGACTACAGGCAGACTGTGAACAAAGGTA 1464942 >seq1989 Length=1255173 Score = 147 bits (162), Expect = 3e-30 Identities = 132/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 654431 CTTCAGGTCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 654372 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || || |||||||| || | |||||||||||||||||||| || ||||| || | Sbjct 654371 GGGCACACCAAGGCCCATATCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 654312 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||| || |||||||| ||| |||||||| || || |||||| Sbjct 654311 CACCACATAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATG 654266 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||||||||||||||| ||||| || ||||| |||| || || |||||| Sbjct 651203 GCCCCAAAGTGCCTCCACTGAAAGCCATAAACTGGGCCCAAATCCCCTTCTTTTCTGCAG 651144 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 | ||| ||| | || || || || ||||||| | ||| |||||||| | ||||||| Sbjct 651143 GTGAATCCCAGGCCATTTAGGAAGTCACGGGACCCATTGGCATCCCAGATTCTCACTCCC 651084 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || | || |||| | ||| | ||| ||| || Sbjct 651083 TTGGACGACAATTCTTTAGCATTTGTGCATCCCTGGAAGA 651044 >seq2337 Length=679044 Score = 143 bits (158), Expect = 3e-29 Identities = 130/166 (78%), Gaps = 12/166 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 369570 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 369629 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || | ||| |||||| ||| | || || |||| Sbjct 369630 TGCCCCAGGCTGAGAACCAGA------------GCCTGGACATCAAGAAACACGTGAACT 369677 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATG 178396 | || ||||||||||| ||||| || || ||||||| ||||| || Sbjct 369678 CCCTTGGGGAAAAGCTGAAGACACTCAGGCTGAGGCTTCGGCGCTG 369723 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| ||||| |||||||| || || || ||||||| Sbjct 371770 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACA 371829 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||| | |||||||||| || |||| Sbjct 371830 TAGAAACCTACATGACAATGAAGATGA 371856 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||||||||||||||||| ||| | || |||||| ||||||| ||||||||| Sbjct 369237 CAAATGAAGGACCAGCTGGACAACATATTGCTGAACGGGTCCTTGCTGGAGGACTTTAAG 369296 Query 178233 G 178233 | Sbjct 369297 G 369297 >seq1960 Length=1325267 Score = 125 bits (138), Expect = 8e-24 Identities = 173/240 (72%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| |||||||| | || ||| || || | | ||| || | || | ||| Sbjct 896243 AGCTGCATTTTCAGCAGTTCAGTGTGATTCAGAAAAATGTGTGCCTATGGCAAAGCGTGT 896302 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 |||||||| || ||||| |||| ||| | ||| || | |||| ||| ||||| || || Sbjct 896303 ACAAAGTCACCTGGCTTCAGGC-GGTGATGTGTGCAATCATGAAGG--AGCAGGGAATAT 896359 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 |||| ||||||||||| || | |||||||||||| | || ||||||||||||||||| Sbjct 896360 TTGGCAATGTTGAAGGGCACACTCAGGCCCATGTCTGCTGATCTCTGGTACAGCTGGCAG 896419 Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 || ||||| | || |||| | | |||||| ||| || || | ||||| |||||| Sbjct 896420 GACAGCTCACTGTTCACCACACAGAGCTGGCAAAGGGCATGACAGAGAGGCAGGGCCATG 896479 >seq1013 Length=2538122 Score = 123 bits (136), Expect = 3e-23 Identities = 202/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| | | || || | ||||| ||||||| |||| |||||||| Sbjct 1753665 GTACTCCCTGGTGTTTATCGTCGGCCTGGTGGGCAACATCCTGGTGGTCCTGGTCCTCAT 1753606 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| || |||||| | ||||| | || ||||||||||| || || Sbjct 1753605 GCAGTACAAGAGGCTCAAGAGCATGACGAGCATCTACTTGCTCAACCTGGCCTTTTCCGA 1753546 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | |||| || ||||| |||| || | || || || | | | ||| Sbjct 1753545 CCTGCTCTTCCTCGTCACGCTGCCCTTCTGGACCGAC-TACAGTC-GGAAGCAGAGCTGG 1753488 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| || || |||||| ||| | | |||| ||| | |||||| |||| Sbjct 1753487 GTG----TTCGGTAACGGCATGTGCAAGCTCCTCTCGGGCTTTTACTACGTGGGCTTGTA 1753432 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 |||||| || | || ||| ||||| |||| | ||| |||| || || Sbjct 1753431 CAGCGAGATCTTTTTCATCGTCCTGCTGACGATAGACCGGTACCTGGC 1753384 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 |||||||||||||| | | ||| | | ||||| ||||| |||| |||||||| Sbjct 1833361 TACTCTCTGGTGTTCATCTGTGGTTTCGTGGGCAACTTGCTGGTCGTCCTCATCCTCATA 1833420 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||| | || ||||||| |||||| |||||||||||||||| | ||| Sbjct 1833421 AACTGCAAAAAGCTGAAGAGCATGACCGACATCTACCTGTTCAACCTGGCCATCTCCGAC 1833480 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCA 8765 ||||| | || | || |||| | |||||||| Sbjct 1833481 CTGCTTTTCCTTCTGACTTTCCCAATGTGGATTCA 1833515 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| |||| |||||||| Sbjct 1844900 TACTCCCTGGTGTTCATCTTTGGTTTCGTGGGCAACTTGCTGGTCGTCCTCATCCTCATA 1844959 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| | ||| | || ||||||| |||||| |||| ||||||||||| | ||| Sbjct 1844960 AACTGCAAAAAGCTGAAGAGCATGACCGACATCTACCTGCTCAACCTGGCCGTCTCCGAC 1845019 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||| | | | |||||| |||| || ||| Sbjct 1845020 CTGATCTTCCTCTTCACCATCCCGTTCTGG 1845049 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 9320 GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACC 9379 || ||||| ||||| | |||| | ||| ||||| ||| ||| |||||||||||||||| Sbjct 1752952 GGCTGGACCTGGCCATGCAGGTGACGGAGGTGATCACCTACACGCACTGCTGCGTCAACC 1752893 Query 9380 CCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCA 9425 || |||||||||| || || || || | ||||| | | |||| || Sbjct 1752892 CCATCATCTACGCCTTCGTTGGGGAGAGGTTCCGCCGGTACCTGCA 1752847 >seq2095 Length=1036233 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||| | ||||| || ||| || | ||| || |||||| Sbjct 1015561 GCCCCAAAATGCCTCCACCGAAAGCCATAAACTAAGCCTAAGTCCCCTTCTTTTCTGCAG 1015620 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| | | | ||||| || |||| | | ||| ||||||| | |||| | Sbjct 1015621 GAGAATTCTAGGCTGTCCAGAAAGTCATAGGACTCATTGGCATCCCAGAATCTCACTTCT 1015680 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAA 147462 |||| || || || |||| | ||| | ||| ||| ||||| || | |||||||||| Sbjct 1015681 TTGGATGACAGTTCTTTAGCATTTGTGTATCCCTCGATAAACCACAGTAACTCCTCCAAA 1015740 Query 147463 ACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATAC 147522 || ||| |||| || || | || || |||||||| || || | || ||||| || Sbjct 1015741 ACACCCTTCCAGAATACACGTTTAGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAG 1015800 Query 147523 CTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGT 147563 | |||||| | ||||| ||||| || | ||| |||| Sbjct 1015801 CACGCCTGCGTGCGGAACACCGACAGGGTCGCGGTGTCCGT 1015841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 146875 TTGAGCTTGGGGAAGGGTCGGGGGTTC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTG 146933 |||| ||| ||||| || | || ||| ||| ||||| |||||||| || || || Sbjct 1015184 TTGACCTTTGGGAAAGGCCTTGGTTTCACTGA--AGCTGCATTTTCAGTGGTTCAGTGTC 1015241 Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993 || || || | |||||| || | | || || |||||||| ||| | |||| | Sbjct 1015242 ATTCAGATAAATGTGCGCATCTTCTAAAGTATGTACAAAGTCATTTGGCGTCTGGCCCAT 1015301 Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 | ||| | | ||||||| |||||| || |||||||| ||||||||||| ||||||| Sbjct 1015302 GATGTGTGTGATCATGTAGA-GAGCAGGGAATAGCTGGCGATGTTGAAGGGCCCCCCCAG 1015360 Query 147054 GCCCATGTCCCCCGACCTCTGGTACA 147079 ||||| || | | |||||||| || Sbjct 1015361 GCCCAGATCTGCTGGCCTCTGGTTCA 1015386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583469838936000