Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2363 116 4e-21 seq1424 105 7e-18 seq1689 89.7 5e-13 seq1767 82.4 8e-11 >seq2363 Length=646923 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 187905 CCTCCTCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 187846 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 187845 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 187786 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| || | |||||| | ||||| Sbjct 187785 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 187726 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| | || || ||||| || ||||| Sbjct 187725 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187679 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 187116 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 187057 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 187056 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186997 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 186996 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 186937 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| |||||||| | || || ||||| || |||||| Sbjct 186936 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 186889 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 186669 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 186610 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 186609 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186550 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 186549 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 186490 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| | || || ||||| || ||||| Sbjct 186489 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186443 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || || || ||||| || |||||||||||| Sbjct 187677 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 187618 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| ||||| | |||||| || || || Sbjct 187617 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 187558 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 187557 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 187498 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| | || || ||||| || ||||| Sbjct 187497 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187451 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 186441 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 186382 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 186381 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186322 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 186321 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 186262 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || | || | || || ||||| || |||||| Sbjct 186261 TCCAGGGTGATGGTCTTCCGCGTCAGGGTCTTCACGAAGATCTGCATT 186214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| ||||| || |||||||||||| | |||| | ||| || ||||| Sbjct 187321 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTG 187262 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| |||| | |||||| || || || ||||| || || || || || || Sbjct 187261 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 187202 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | |||||| | ||||| || || || ||||| |||||||| Sbjct 187201 GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGT 187142 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| Sbjct 187141 CAGGGTCTTCACGAAGATCTGCAT 187118 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||| | ||||| || |||||||||||| | |||| | Sbjct 186887 AGACGCAGGACCAGGTGCAGGGTG-ACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 186829 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || ||||| |||| | |||||| || || || ||||| || Sbjct 186828 CCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 186769 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | |||||| | ||||| || || || Sbjct 186768 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTG 186709 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| |||||||| | || || ||||| || ||||| Sbjct 186708 ATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186671 >seq1424 Length=2309046 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || || || || || || ||||| ||||||||||| || | Sbjct 23440 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGAA 23499 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 23500 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 23559 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | |||||| Sbjct 23560 ATGCCTTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGTTCCACT 23619 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 23620 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 23670 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || || || || || || || || ||||||||||| || | Sbjct 22756 CCACCCCTCAGACGTAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 22815 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||||||||| || | | |||||| || || || Sbjct 22816 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 22875 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | |||||| Sbjct 22876 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 22935 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || |||||||| ||||| Sbjct 22936 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 22982 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || || || || || |||||||||||||| | Sbjct 22984 CCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAA 23043 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||||||||| || | | |||||| || || || Sbjct 23044 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 23103 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | ||||| | |||||| Sbjct 23104 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 23163 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 23164 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23210 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || || || ||||| ||||||||||| || | Sbjct 23212 CCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGAA 23271 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||||||||| || | | |||||| || || || Sbjct 23272 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 23331 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | ||||| Sbjct 23332 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACC 23391 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 23392 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23438 >seq1689 Length=2064527 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||||||||| || || ||||| |||||||||||| |||| || | ||| ||| || Sbjct 174754 AGTCTCAACACGAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAA-GGTATG 174812 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | ||||||| || || || ||||| Sbjct 174813 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTCCTTC 174872 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || | || || || || | | | | ||| || | | ||| || |||||||| Sbjct 174873 CTTATTCTGGATCTTGGCCTTTATATCTCCTATTGTATCCAAGGCTTCAACCTCGAGAGT 174932 Query 134675 AATGGTTTTACC-GGTTAAAGTTTTAACGAAAATTTGC 134711 |||||| || || || | ||||| | |||||| ||| Sbjct 174933 AATGGTCTTCCCTTGTAAGGGTTTTCAAGAAAATCTGC 174970 >seq1767 Length=1785757 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || |||||||||||||||||||| | ||| ||| Sbjct 523798 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAA-GGTACA 523856 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | |||||| | ||||| |||| | ||||||| || || || ||||| Sbjct 523857 TCCATCTTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTC 523916 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||| | || | ||| || || ||||| Sbjct 523917 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGT 523976 Query 134675 AATGGTTTTACCGGTTAA-AGTTTTAACGAAAAT 134707 | ||| || || ||||| ||||| |||||||| Sbjct 523977 GAAGGTCTTCCCTGTTAAGGGTTTTCACGAAAAT 524010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505382669474800