Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1841 136 5e-27 seq654 129 8e-25 seq1669 104 3e-17 >seq1841 Length=1603521 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||||||||| | || Sbjct 610006 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 610065 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||| ||||| ||||||||||| ||||| |||||||| || | | ||||||| Sbjct 610066 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 610125 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 610126 TTTCTTATACCAT 610138 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 625537 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCGCGCTGT 625596 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||||| ||||||| || Sbjct 625597 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 625656 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 625657 TCCAGGTAAATAGC 625670 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 |||| || ||||| || | || ||||| || || || ||||| | |||||||| || | Sbjct 632115 TAGTGCCAGCATTGAAAAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGT 632174 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTG-ATGAATTCCTATCGCGACACGCATC 70107 |||| ||||||||||| | || |||| | ||| |||||| || | | || | |||| Sbjct 632175 TGTACGTTTCAATAGCGGCGTCAATAT-CTTCTGCATGAATCCCCACAGATACTCTCATC 632233 Query 70108 AACATATGCTGAGGTCGTTC 70127 |||||||| || |||| ||| Sbjct 632234 AACATATGTTGCGGTCTTTC 632253 >seq654 Length=93227 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 54046 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCT 53987 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 53986 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 53927 Query 39759 CAACAA 39764 | |||| Sbjct 53926 CGACAA 53921 >seq1669 Length=5184857 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 4063058 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 4062999 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| ||||| |||||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 4062998 AACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 4062939 Query 39761 AC 39762 || Sbjct 4062938 AC 4062937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686887419963600