Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1669 107 2e-18 seq654 104 2e-17 >seq1669 Length=5184857 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 4062937 GTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCCTTTGCTGCTATATTCTGG 4062996 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 ||||||||| ||||| | |||||||| | || ||||| ||||| | || || | ||| Sbjct 4062997 TTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGAT 4063056 Query 44255 GAAG 44258 |||| Sbjct 4063057 GAAG 4063060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||||||||| || ||||| || ||||| || ||||| | Sbjct 4069429 AAAATCCCTTTGATTTTATGGAAAATATTTCTTTAGAAGGAAAGACAAATTTCTTTGAGA 4069488 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 4069489 AACGAGTTTCAGAGTATCAGCG 4069510 >seq654 Length=93227 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| ||||||||||| | ||||||| || ||||| || || || ||||||||| Sbjct 52999 CGGTTTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTACGGCTTCCAAATTGCC 53058 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 53059 ATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 53115 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| ||||||| ||||| | |||||||| || |||||||| || || ||||| Sbjct 53911 GGAGAACGTGTTGTCGCTTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 53970 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 53971 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTT 54030 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 54031 ATTAGCAGAGATGA 54044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443938452450