Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1841 89.7 6e-13 seq654 82.4 9e-11 >seq1841 Length=1603521 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 ||||||| |||||||| ||||| ||||||||||| |||||||| ||||||| | |||| Sbjct 624289 AGTCTCAGACCGAGACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAATCGGAAGA 624230 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 | || || | || |||| ||||| | ||| || ||||||||||| | || | Sbjct 624229 GCAACCAGCAAAACCTGGGAACAATCAAATGCAGCAACCTGTGTACAGAAATAGTAGAGT 624170 Query 105024 TTACAGACAAAGATGAG 105040 ||| |||||||||| Sbjct 624169 ATACCAGCAAAGATGAG 624153 >seq654 Length=93227 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 95170 AATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAG 95229 ||||||||||||||||||||||||||| || || ||||| || |||||||| || ||| Sbjct 55358 AATCCATTTGACTTCATGGAGAACATTTCACTGGAAGGGAAAACTAACTTCTTTGAGAAG 55417 Query 95230 AGGGTTGGGGACTATGGCAAGATGG 95254 || || || || ||| ||||||| Sbjct 55418 AGAGTGGGCGAGTATCAGAAGATGG 55442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242646007600