Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1991 100 3e-16
seq2213 91.5 2e-13
seq1669 89.7 6e-13
seq654 86.0 7e-12
>seq1991
Length=4069235
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| ||||||||||||| || | ||||| || ||
Sbjct 1619068 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 1619009
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| |
Sbjct 1619008 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1618949
Query 117425 ATCGT 117429
|| ||
Sbjct 1618948 ATGGT 1618944
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 1619068 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 1619009
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| | |||||| || || ||| ||||| ||||||||||||||||| | |
Sbjct 1619008 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1618949
Query 152149 ATCGT 152153
|| ||
Sbjct 1618948 ATGGT 1618944
>seq2213
Length=3644243
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||| || || ||||||||| ||| || || || || ||
Sbjct 2001465 GTGAAAATATAACGAGGGCTTGCGGCGTCTTTGCCACCATGAAGTCGAGTTCCAAACTGA 2001524
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | |||||| ||||||||||| |||||||| || |||
Sbjct 2001525 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTTACA 2001584
Query 117425 ATCGT 117429
|| ||
Sbjct 2001585 ATAGT 2001589
>seq1669
Length=5184857
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829
||||||||||||| || | |||||| ||||| | || ||||||||||| || | ||||
Sbjct 4063060 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 4063001
Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889
| ||||| || || ||| ||||| || |||||| || ||||| ||| |||||||
Sbjct 4063000 TTAACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4062941
Query 74890 CGAC 74893
| ||
Sbjct 4062940 CCAC 4062937
>seq654
Length=93227
Score = 86.0 bits (94), Expect = 7e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||| | ||||||||||| ||||| || |||||
Sbjct 54044 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 53985
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| || || | || |||||| |||||||| ||||| || ||||| |||
Sbjct 53984 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 53925
Query 74892 ACAAGGCGTT 74901
|||| ||||
Sbjct 53924 ACAACACGTT 53915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547198967902000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |