Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1991 100 3e-16 seq2213 91.5 2e-13 seq1669 89.7 6e-13 seq654 86.0 7e-12 >seq1991 Length=4069235 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 1619068 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 1619009 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 1619008 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1618949 Query 117425 ATCGT 117429 || || Sbjct 1618948 ATGGT 1618944 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 1619068 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 1619009 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 1619008 CCAATAGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1618949 Query 152149 ATCGT 152153 || || Sbjct 1618948 ATGGT 1618944 >seq2213 Length=3644243 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||| || || ||||||||| ||| || || || || || Sbjct 2001465 GTGAAAATATAACGAGGGCTTGCGGCGTCTTTGCCACCATGAAGTCGAGTTCCAAACTGA 2001524 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 2001525 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTTACA 2001584 Query 117425 ATCGT 117429 || || Sbjct 2001585 ATAGT 2001589 >seq1669 Length=5184857 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || ||||||||||| || | |||| Sbjct 4063060 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 4063001 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | ||||| || || ||| ||||| || |||||| || ||||| ||| ||||||| Sbjct 4063000 TTAACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4062941 Query 74890 CGAC 74893 | || Sbjct 4062940 CCAC 4062937 >seq654 Length=93227 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 54044 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 53985 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || |||||| |||||||| ||||| || ||||| ||| Sbjct 53984 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 53925 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 53924 ACAACACGTT 53915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198967902000