Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1837 98.7 1e-15 >seq1837 Length=1607474 Score = 98.7 bits (108), Expect = 1e-15 Identities = 236/355 (66%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| || |||||||| |||||||| || || || || || ||| | || ||||| Sbjct 103426 CCCCTTAGTAAGGAAGAGGCAGAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAA 103485 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||| ||| | || | ||||||||||||||||| || ||||| |||| ||| | Sbjct 103486 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 103545 Query 13791 CACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGT 13848 || |||||| || || | || | || | | || | | | ||| || | Sbjct 103546 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCGGTGATT--GGCATTGCATCCT 103603 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 | ||| ||| || ||||| | |||| | |||||||| | || ||||||| Sbjct 103604 GTTTCAATAATGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTATGCATCATGGAGTC 103663 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | || ||||||||||||| ||| ||| |||||| || | || |||| || Sbjct 103664 GGGTCCAGGCCGACCTCAACTGTATGCAGGACCTCTACAGAATGAGTGCAAACTGGAAGT 103723 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 || || | || || || || ||||| || || | || ||||||||||| || || Sbjct 103724 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGT 103778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658718696742400