Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1989 132 4e-26 seq2095 96.9 3e-15 >seq1989 Length=1255173 Score = 132 bits (146), Expect = 4e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007 |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| || || Sbjct 654421 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCA 654362 Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067 || ||||| || | ||||||||||| ||||| || || ||||| || | ||| || Sbjct 654361 AGGCCCATATCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACATAG 654302 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| || | ||| ||||||||||| || |||||||| Sbjct 654301 AACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAG 654264 >seq2095 Length=1036233 Score = 96.9 bits (106), Expect = 3e-15 Identities = 411/643 (64%), Gaps = 36/643 (6%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| | ||||| ||||| || || ||| || | ||| || ||| | | | || Sbjct 1015216 AGCTGCATTTTCAGTGGTTCAGTGTCATTCAGATAAATGTGCGCATCTTCTAAAGTATGT 1015275 Query 29924 ACAAACTCTCCCGGT-TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982 ||||| || || ||| |||| ||| ||| | |||||||| | ||| || || || Sbjct 1015276 ACAAAGTCATTTGGCGTCTGGCCCA-TGATGTGTGTGATCATGTA-GAGAGCAGGGAATA 1015333 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 |||||||||||| ||||| |||| || |||| || | | |||||||| || Sbjct 1015334 GCTGGCGATGTTGAAGGGCCCCCCCAGGCCCAGATCTGCTGGCCTCTGGTT-------CA 1015386 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || | || ||||| || | || |||||| || | || || | Sbjct 1015387 CG------------------CCTAGAACTGGCAAAGGGTATGGCACCGAAGTAGGGC--T 1015426 Query 30103 GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 ||| ||| ||||| || ||||| |||| || |||||| | |||| || ||||| Sbjct 1015427 GAGAA--AAGATCTTTCGGTTTCCAAGCGCTCAGGATGATTCTTTTGTCATCACGGTTGG 1015484 Query 30162 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30221 | || | ||| | | ||| |||| || || || || || || || || Sbjct 1015485 TTTCGAACATGTCAATCACCTTTGGCAG-TGGTCTACTCCTTGACCTGAATAACCTTAAT 1015543 Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 ||| || |||| ||||| || |||||||||||| | || || || || || | || Sbjct 1015544 CCATATCTTTGTATTCTGCCCCAAAATGCCTCCACCGAAAGCCATAAACTAAGCCTAAGT 1015603 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 | || |||| ||| ||| | |||||| |||||| ||| | ||||| | Sbjct 1015604 CCCCTTCTTTTCTGCAGGAGAATTCTAGGCTGTCCAGAAAGTCATAGGACTCATTGGCAT 1015663 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAAC 30400 |||||| | || | || || || ||||| | |||||| | ||||| || ||| Sbjct 1015664 CCCAGAATCTCACTTCTTTGGATGACAGTTCTTTAGCATTTGTGTATCCCTC-GATAAAC 1015722 Query 30401 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 ||||| | |||||||| || ||||||| || || | || || || || || ||||| Sbjct 1015723 CACAGTAACTCCTCCAAAACACCCTTCCAGAATACACGTTTAGTTGTCAGCAGAGGAAAT 1015782 Query 30461 TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACA 30503 | | | |||| ||| | ||||| | | ||||| |||| Sbjct 1015783 TCATCTCTCAGGCTGTAGCACGCCTGCGTGCGGAACACCGACA 1015825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406298069749080