Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1719 224 8e-54 seq2449 113 4e-20 >seq1719 Length=1953405 Score = 224 bits (248), Expect = 8e-54 Identities = 207/262 (79%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 1269 GAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAA 1328 ||||| | || |||||| | ||||| |||||||| ||| | ||||| |||||||||| Sbjct 1467776 GAAACTTCCCATGAAGTTTTGATTGTGACATGGCAGAAAATCAAAGCTGTAAGCCCAGAA 1467717 Query 1329 AACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAA 1388 |||||||| || || || || |||| || ||||| || ||| | || || || ||||| Sbjct 1467716 AACATGGCTACCTTCAGCAAGAACCATGGAGTTGTGGTCCAGACTGCCTATAAGGATAAG 1467657 Query 1389 ATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTG 1448 || ||||| |||||||| ||||| || | | |||| || ||||||||||| || || ||| Sbjct 1467656 ATAAACATCACTGAGCTGGGACTCCAGAGCTCAACCATTACCTTCTGGAATACTACGTTG 1467597 Query 1449 GATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508 |||||||| ||||| |||||||| | || || |||||||| |||||||| || |||||| Sbjct 1467596 GATGATGAGGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAAATCTCAGGA 1467537 Query 1509 ATAGGGTGTCTAACCCTTTTTG 1530 |||| ||||| ||||| |||| Sbjct 1467536 ATAGCATGTCTCACCCTCTTTG 1467515 >seq2449 Length=553460 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 265154 GTGGTGGAGGAGCTTTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 265213 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 265214 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 265273 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 265274 ATCGCCCTGTGGATGACCGA 265293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414464221924360