Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq54 91.5 1e-13 seq1424 84.2 2e-11 >seq54 Length=460634 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| | || ||| ||||||||| |||||||| || | || || | | | || Sbjct 180528 CACCAAGGGCAGGGTGGACTCTTTTTGAATATTATAGTCTGAGAGAGTGCAGCCATTCTC 180469 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||| |||| || || ||||||||||| | || | || ||| ||||| Sbjct 180468 CAGCTGTTTGCCCACAAAGATCAGTCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTG 180409 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| | | | || || || | || || | | ||||| | || Sbjct 180408 GATTTTAGCTTTGACATTTTCGATGGTGTCACT-GGCTGGACCTTGAGTGTGATGGTCTT 180350 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||||||| || || |||||||| ||||||| Sbjct 180349 GCCCGTCAGGGTCTTCACAAAGATCTGCATCT 180318 >seq1424 Length=2309046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || || | |||| |||| ||| || || |||||| || || || ||||| | Sbjct 22754 AGCCACCCCTCAGACGTAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAG 22813 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 ||| || || | || || ||||||||||| ||||| ||||| | ||||||||| | | Sbjct 22814 AAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAG 22873 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || || || ||| ||| || || | || | | || || || | |||| Sbjct 22874 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCA 22933 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| | || || ||||| || || || || || ||||| Sbjct 22934 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 22982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532564633370