Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1424 102 6e-17
seq171 87.8 1e-12
>seq1424
Length=2309046
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || || || || ||||| || ||||| || |||
Sbjct 22982 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 22923
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | || || ||||| | || ||||| ||
Sbjct 22922 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCTCCAGACCA 22864
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| |||||||| ||||| || | |||||| | ||||||||
Sbjct 22863 GCAGAGGCTTATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 22804
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 22803 CATTCAGAAAGAGTCGAC 22786
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||| || ||||| || ||||| || || || || ||||| || ||||| || ||
Sbjct 23669 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 23610
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | |||| || || || || ||||| | || |||||
Sbjct 23609 AGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGAC 23550
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || ||||| ||||| || |||||||| | |||||| | ||||||
Sbjct 23549 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 23490
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || ||||| ||
Sbjct 23489 AACATTCAGAAGGAGTCGAC 23470
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| || || || || | |
Sbjct 23438 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCAAGT 23379
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | || || ||||| | || ||||| ||
Sbjct 23378 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCCCCAGACCA 23320
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| |||||||| ||||| || | |||||| | ||||||||
Sbjct 23319 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 23260
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 23259 CATTCAGAAGGAGTCGAC 23242
>seq171
Length=354554
Score = 87.8 bits (96), Expect = 1e-12
Identities = 145/208 (70%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||| | ||||| || | ||| || || ||||||||||| ||||| |
Sbjct 310793 AAGATGCAGATTTTCATAAAAACTCTTATGGGGAAGACCATCACTCTCGAGGTTGAACAC 310852
Query 23668 ACGGA-CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || | |||| |||| |||||| | || |||| | || || ||
Sbjct 310853 TCAGATAACGATAGAAAATGTAAAGGCCAAAATTCAGAATAAGGAAGAAATTCCTCCTGA 310912
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| || | | | ||||| ||||| ||||||||||| | | | ||| | || ||
Sbjct 310913 TCAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTCT----GACTA 310968
Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814
|||||| ||||| ||||||||| | |||
Sbjct 310969 CAACATTCAAAAGGAGTCCACACTTCAT 310996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337999342464920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |