Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1424 102 6e-17 seq171 87.8 1e-12 >seq1424 Length=2309046 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 22982 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 22923 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || ||||| | || ||||| || Sbjct 22922 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCTCCAGACCA 22864 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| ||||| || | |||||| | |||||||| Sbjct 22863 GCAGAGGCTTATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 22804 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 22803 CATTCAGAAAGAGTCGAC 22786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || ||||| || || Sbjct 23669 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 23610 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || || || ||||| | || ||||| Sbjct 23609 AGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGAC 23550 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | |||||| Sbjct 23549 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 23490 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 23489 AACATTCAGAAGGAGTCGAC 23470 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || | | Sbjct 23438 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCAAGT 23379 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || ||||| | || ||||| || Sbjct 23378 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCCCCAGACCA 23320 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| ||||| || | |||||| | |||||||| Sbjct 23319 GCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAA 23260 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 23259 CATTCAGAAGGAGTCGAC 23242 >seq171 Length=354554 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | ||||| || | ||| || || ||||||||||| ||||| | Sbjct 310793 AAGATGCAGATTTTCATAAAAACTCTTATGGGGAAGACCATCACTCTCGAGGTTGAACAC 310852 Query 23668 ACGGA-CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | |||| |||| |||||| | || |||| | || || || Sbjct 310853 TCAGATAACGATAGAAAATGTAAAGGCCAAAATTCAGAATAAGGAAGAAATTCCTCCTGA 310912 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | | ||||| ||||| ||||||||||| | | | ||| | || || Sbjct 310913 TCAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTCT----GACTA 310968 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| ||||| ||||||||| | ||| Sbjct 310969 CAACATTCAAAAGGAGTCCACACTTCAT 310996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999342464920