Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq654 98.7 8e-16 seq1669 86.0 5e-12 >seq654 Length=93227 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 53114 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 53055 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || ||||| || || | |||||||| | |||||||| Sbjct 53054 ATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTC 53011 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 54044 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 53985 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 53984 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 53925 Query 4692 AC 4693 || Sbjct 53924 AC 53923 >seq1669 Length=5184857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| || || |||||||| |||||||||||| Sbjct 4069507 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTCTTTCCTTCTAAAGAAATATTTTCC 4069448 Query 4320 ATAAAATCAAACGGATTAGTTGCGT 4344 ||||||||||| ||||| ||||| Sbjct 4069447 ATAAAATCAAAGGGATTTTCTGCGT 4069423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 4057394 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 4057338 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || | |||||| || | ||| || | Sbjct 4057337 TGTGAGAGATAAAATACTTCTCTTCTGATTTAAGCTTGTACCAGTGAGGGAGATCCTTTG 4057278 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 4057277 ATAAGTCAAC 4057268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036640379170