Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1841 136 5e-27
seq654 113 6e-20
>seq1841
Length=1603521
Score = 136 bits (150), Expect = 5e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | ||
Sbjct 610006 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 610065
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||| | ||| |||||||| |||||||| |||||||| || | | |||||||
Sbjct 610066 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 610125
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 610126 TTTCTTATACCAT 610138
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || ||||| || | || ||||| ||||| |||||||| | |||||||| || ||
Sbjct 632116 AGTGCCAGCATTGAAAAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTT 632175
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
||| ||||||||||| | || || || | |||||| || || | ||| | ||||||
Sbjct 632176 GTACGTTTCAATAGCGGCGTCAATATCTTCTGCATGAATCCCCACAGATACTCTCATCAA 632235
Query 78518 CATATGCTGAGGTCTTTCAACC 78539
|||||| || ||||||||| ||
Sbjct 632236 CATATGTTGCGGTCTTTCAGCC 632257
Score = 102 bits (112), Expect = 1e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | |||
Sbjct 625537 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCGCGCTGT 625596
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| |||||||| | ||||| ||||||| ||
Sbjct 625597 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 625656
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | | ||||||||
Sbjct 625657 TCCAGGTAAATAGCAAATGCCCCAGGTCG 625685
>seq654
Length=93227
Score = 113 bits (124), Expect = 6e-20
Identities = 97/120 (81%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || ||||| ||||| || ||||| ||||| ||||| |||
Sbjct 54044 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 53985
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284
||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| |||
Sbjct 53984 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 53925
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/145 (76%), Gaps = 4/145 (3%)
Strand=Plus/Minus
Query 47789 GGTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTC 47844
||||| |||| ||||| |||| || | ||| ||| ||| | || ||||| ||||
Sbjct 55502 GGTTCATTTAGAAGTCGGCATCCAAGGTAAACGAATTCTCTGTTGGACCTGACATCACTC 55443
Query 47845 CCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA 47904
|||| || ||||| || ||||| | ||||| || || |||||||| ||||||| ||| |
Sbjct 55442 CCATCTTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCTTCCAGTGAAA 55383
Query 47905 TATTTTCCATAAAATCAAATGGATT 47929
| || ||||| || |||||||||||
Sbjct 55382 TGTTCTCCATGAAGTCAAATGGATT 55358
Score = 95.1 bits (104), Expect = 2e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||||||| |||||| || || | |||||||||||||| || || || |
Sbjct 53125 TTTCCTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 53066
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|||| || || || || || ||||| ||||| | |||||||||||||| || ||
Sbjct 53065 TTTCCATGGCAATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTC 53011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694647178433600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |