Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1841 136 5e-27 seq654 113 6e-20 >seq1841 Length=1603521 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | || Sbjct 610006 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 610065 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||| | ||| |||||||| |||||||| |||||||| || | | ||||||| Sbjct 610066 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 610125 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 610126 TTTCTTATACCAT 610138 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| |||||||| | |||||||| || || Sbjct 632116 AGTGCCAGCATTGAAAAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTT 632175 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||| ||||||||||| | || || || | |||||| || || | ||| | |||||| Sbjct 632176 GTACGTTTCAATAGCGGCGTCAATATCTTCTGCATGAATCCCCACAGATACTCTCATCAA 632235 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 |||||| || ||||||||| || Sbjct 632236 CATATGTTGCGGTCTTTCAGCC 632257 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | ||| Sbjct 625537 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCGCGCTGT 625596 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | ||||| ||||||| || Sbjct 625597 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 625656 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 625657 TCCAGGTAAATAGCAAATGCCCCAGGTCG 625685 >seq654 Length=93227 Score = 113 bits (124), Expect = 6e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 54044 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 53985 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| ||||| | || ||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 53984 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 53925 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 47789 GGTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTC 47844 ||||| |||| ||||| |||| || | ||| ||| ||| | || ||||| |||| Sbjct 55502 GGTTCATTTAGAAGTCGGCATCCAAGGTAAACGAATTCTCTGTTGGACCTGACATCACTC 55443 Query 47845 CCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA 47904 |||| || ||||| || ||||| | ||||| || || |||||||| ||||||| ||| | Sbjct 55442 CCATCTTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCTTCCAGTGAAA 55383 Query 47905 TATTTTCCATAAAATCAAATGGATT 47929 | || ||||| || ||||||||||| Sbjct 55382 TGTTCTCCATGAAGTCAAATGGATT 55358 Score = 95.1 bits (104), Expect = 2e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| |||||| || || | |||||||||||||| || || || | Sbjct 53125 TTTCCTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 53066 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || ||||| ||||| | |||||||||||||| || || Sbjct 53065 TTTCCATGGCAATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTC 53011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694647178433600