Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1669 107 2e-18 seq136 89.7 5e-13 seq2234 86.0 7e-12 seq1602 86.0 7e-12 >seq1669 Length=5184857 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | |||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 4063060 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 4063001 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 4063000 TTAACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4062941 Query 23651 CCAC 23654 |||| Sbjct 4062940 CCAC 4062937 >seq136 Length=3211738 Score = 89.7 bits (98), Expect = 5e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||||||| |||||||||||||||| |||||||||||| |||||||| | Sbjct 1951294 CTCCTGGGCTCAAGCTATTTTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACA 1951353 Query 8465 AGCCACC 8471 |||||| Sbjct 1951354 TGCCACC 1951360 >seq2234 Length=803312 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| |||||||||||| |||||| | Sbjct 512516 CTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCA 512575 Query 8465 AGCCACCACGCC 8476 ||||||||||| Sbjct 512576 TGCCACCACGCC 512587 >seq1602 Length=2211405 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| | | |||| || ||||||||||||||||| |||||||||||| |||||||| | Sbjct 713886 CTCCTGAGCTCAACTGATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACA 713945 Query 8465 AGCCACCACGCCAAGCTAATTT 8486 ||||||||||| |||| ||| Sbjct 713946 TGCCACCACGCCTGGCTATTTT 713967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521471768686000