Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2035 192 8e-44 seq1806 132 7e-26 >seq2035 Length=3963056 Score = 192 bits (212), Expect = 8e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| |||||||| |||||||||||| || ||||| || ||||| ||||| Sbjct 596361 GTCTGGAACAGACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 596420 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| || || | ||||| || |||||||||||||| || ||||| ||||||||||| Sbjct 596421 CTGTTATGCTCTCGCAGCCAAATCGTGGCGTACATCATCAGACCAGGCACCAGGCCAAAC 596480 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| || |||| || ||| || | | || ||||||||||| | | Sbjct 596481 ACCTCCTGCCCCACAGCAAGCCGCAGGTGTTCAGGGATGTGAGGGGGATAGATCATCTCC 596540 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 596541 ACCTGACTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 596589 Score = 122 bits (134), Expect = 1e-22 Identities = 196/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| || || || || | |||| ||||||||||| | ||| | |||| ||| Sbjct 594786 GGACAACCTTTCACATTATTGCAGATGAGAGACTGAATTGAGGCGGTGTTGATGATTTTA 594845 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || || ||||| || || ||||| ||||||||||| || || || || || Sbjct 594846 AAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTGAGGAGAACATATAGGATTA 594905 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| | |||||| || || || | || | || ||||||| |||||| Sbjct 594906 CCCATAAGTCCTTTCAAGGAGAAAGGTGCTCCAACTTCTACCATAGTCTCACCAAAGATG 594965 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | ||||| |||||||| |||| | | | |||||||||| || || | ||| Sbjct 594966 GCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGATACAGCTCCATGGCATCAATGTCA 595025 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || ||||| || | || ||||| || ||||| |||||| Sbjct 595026 CCATAAAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCCT 595067 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| || || || || |||||| ||| ||| | || Sbjct 596933 TCTTACCCCATGACCCAGTCCTTTGGTAAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 596992 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || |||||||| ||| |||| || |||||||| || || |||||||||||||| Sbjct 596993 AAATTGATGGGTGAAATGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 597052 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || | || | || | || ||| ||||||||||| Sbjct 597053 AGGGATAAACTTTCTTCTTAGGAGAAATTTTTCCACAA 597090 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | | |||||| || |||| || || || || |||| || | Sbjct 597516 TCACCTTTCACACCCATGGCAGTTGGGCAGTCGTCAGCCACAGGGGGAAGAACTCTGGTA 597575 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||||||| || || |||||||||||| ||| | |||| || || || | Sbjct 597576 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTATAAGTT 597635 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||||||||||| ||| ||||| |||| Sbjct 597636 GGTGGGCTGTCAATCAGATCTGATCTGGCTGA 597667 >seq1806 Length=1669630 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || || || ||||| | |||||||||| |||| | Sbjct 62039 TCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTTGACTTCCAGTACTCCGGAG 62098 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| |||| | | |||||| |||||||| || || ||||| | || | || | Sbjct 62099 AACAGATGGGGTTCCCTAAGAGGCCCTTGAGGGAAAAGGGGGCCCCAATTTCTATCATAC 62158 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| || | | || ||| | ||| | ||||| Sbjct 62159 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGGAGTCCTGGGTAGAACTCCA 62218 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| |||||| || || || | || || || ||||||||||||||| Sbjct 62219 AGGCATCGATGTCTCCATACAGTTCCTCCAACTCAGCTGCCATCTCCTTTTCTCCT 62274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||||| |||||| || | |||||||| || |||||||| | ||| || || Sbjct 69194 TCACCGATAAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCAGGTGGGGTGC 69253 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 69254 TCAGCCTTCAACAGGTCACACACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCATAGAGC 69313 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | |||||| || |||| || || || |||| Sbjct 69314 ATGAGCCCAGGAAGCAGGCCGAACACCTCCTGGCCCACTGCCA 69356 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 ||||||||||| |||| | || |||||| | ||||| || |||| | ||| | | Sbjct 70316 CTTACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGGCCCATCTTGCCAGA--AGTTTTGA 70373 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||| ||| ||||| | Sbjct 70374 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGCGCCTTGGGGGT 70433 Query 9768 CGGGAGTGAAGGTCCTCC 9785 |||| |||| ||||| Sbjct 70434 CGGGTATGAACTCCCTCC 70451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716854487209600