Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq61 257 2e-63 seq37 87.8 2e-12 >seq61 Length=12918418 Score = 257 bits (284), Expect = 2e-63 Identities = 600/889 (67%), Gaps = 21/889 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || || || || | || || || |||||||| || || || || Sbjct 2373322 ACTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 2373381 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || |||||||||||||| ||||| ||||| || ||||||| || || | || | Sbjct 2373382 GAGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGA--AACCTA 2373439 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | ||| || | |||||||| ||||| || |||||| |||||||| Sbjct 2373440 GCTCCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCA 2373499 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT- 16900 | || || ||| || || | || || || | || || ||||| ||| || Sbjct 2373500 TCCCAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCAC 2373559 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 | | || | || || ||| | ||| || ||| | ||| | |||||||| |||||| Sbjct 2373560 TGAGGATTATTTCTTTCA-CTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATC 2373618 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || || || || || ||||| || ||||| |||||||| || |||||||| Sbjct 2373619 AGGCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTG 2373678 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAA-CCAAAATATCGCGGCGAACGACCCAGAAAA 17079 | || |||||| ||||| ||| ||| | ||| ||||||| || ||||| |||||||| Sbjct 2373679 AGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAA 2373738 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || || || || | ||||| || | | ||||| | || | || ||| ||| Sbjct 2373739 GAAGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCTCTCTGTG 2373797 Query 17140 ACGAATCCATTTCTGCA---CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 | ||||| | || |||| || || || | ||| | ||| ||| ||||| || Sbjct 2373798 TCCAATCC----CCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAAT 2373853 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATA-TACGTATCGATGAGTAGGC 17255 || || || | || || || ||| | | |||| || ||||| |||| || | Sbjct 2373854 AGCATTGAAGAGGTTTTCCCTT-CCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGAC 2373912 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 |||||||||| |||||| |||| ||| |||| | ||||| || || || || ||||||| Sbjct 2373913 TGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTT 2373972 Query 17316 CCGCTATTTGAACTTCCACG-TAGA--ATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 | | || |||||||| | || | | | || | || || || | |||||||||| Sbjct 2373973 CTGTGATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGT 2374032 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 || |||||||| || |||| || ||| |||| || | ||||| || | || Sbjct 2374033 CG-GGGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGG 2374091 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 || || || || | || ||||| | ||||||| |||| ||||| || ||| Sbjct 2374092 CGTCCCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCT 2374151 Query 17493 CTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATAC 17541 | ||||| | ||||| | ||| ||||| | ||| | | |||||| || Sbjct 2374152 CGGCCTTCCTGTACATCTGCCAGATATCGTGGTACTCGACGGGGAAGAC 2374200 >seq37 Length=21270769 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||| ||||| || ||||||||||| ||||||||||| |||||||| || || Sbjct 14839891 ATGTAAGTATCAATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGG 14839950 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || |||||||| | | |||||||| Sbjct 14839951 AAGCCATAGAAACAGCGGGCTTCTGTCACCTGAACTTC 14839988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| || ||||| |||||||| || |||||||| | || |||||| ||||| ||| | Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 | | ||| ||||||| || || || ||||||||||| || || || || Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCAC 14837921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517462501584600