Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq61 201 1e-46 seq28 102 8e-17 seq37 84.2 2e-11 >seq61 Length=12918418 Score = 201 bits (222), Expect = 1e-46 Identities = 584/888 (66%), Gaps = 11/888 (1%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || || || | || || ||||||||||| || || || | Sbjct 2373322 ACTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 2373381 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| ||||| || ||||| ||||| || ||||||| ||| | | || | Sbjct 2373382 GAGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAAC--CTTGCTGAAACCTA 2373439 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | | ||| || | |||||||| ||||| || |||||| ||| || | Sbjct 2373440 GCTCCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCA 2373499 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || || | || | || | || | |||||||| ||| || Sbjct 2373500 TCCCAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCAC 2373559 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 || || || | ||| || || ||| | || |||| ||||| ||||| | Sbjct 2373560 TGAGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCA 2373619 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 | || || ||||| || || | || || || ||||| |||||||| |||||||| || | Sbjct 2373620 GGCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGA 2373679 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAA-CCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 || ||||| ||||| ||| ||| | ||||||||||| ||||| || || |||||| Sbjct 2373680 GGCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAG 2373739 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || || || || | |||||||| | | ||||| | || | ||| ||| | | Sbjct 2373740 AAGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCTCTCTGTGT 2373798 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | ||||| | |||| || || || | || | |||| ||| ||||| || || Sbjct 2373799 CCAATCCCCACAAGG-CCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCA 2373857 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 || || | || || || | | ||| | | || |||||| | || | ||||||| Sbjct 2373858 TTGAAGAGGTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGTAC 2373917 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 ||||| |||||| |||| || |||| | ||||| |||||||| || || || || | Sbjct 2373918 ATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTGTG 2373977 Query 16559 ATTTGTACTTCCACG-TAAA--ATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 || || ||||| | |||| | | || ||||||||||| | ||||| ||||| Sbjct 2373978 ATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-GGG 2374036 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || || || || |||| |||||| |||| || | ||||| | | || | | Sbjct 2374037 GCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGTCC 2374096 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 | | | | || ||||| | ||||||| || | |||||| ||| ||| | ||| Sbjct 2374097 CGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGGCC 2374156 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACG 16783 || | ||||| | ||| ||||| | ||| | | ||| || ||| || Sbjct 2374157 TTCCTGTACATCTGCCAGATATCGTGGTACTCGACGGGGAAGACGGCG 2374204 >seq28 Length=26224161 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| |||||||| || | || ||||| |||| ||||| Sbjct 21882818 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCT 21882759 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||| || || |||||||| || ||||| ||||| || || ||||||| ||||| | Sbjct 21882758 TTAGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 21882699 Query 16344 C 16344 | Sbjct 21882698 C 21882698 >seq37 Length=21270769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || || ||||| |||||||| |||||||| || | || ||||| ||||| ||| || Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | || ||||| Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGC 14837933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511332286025400