Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq19 102 7e-17 >seq19 Length=29725166 Score = 102 bits (112), Expect = 7e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| |||| | |||| ||||||||||| ||| | | || ||||| || || | ||| Sbjct 5421170 GATCTCCCTCTCATGGCCCTACCTCCATGCCACGCCCTTTGCCAGTTCTATGTGGTGAAC 5421111 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 ||||| | |||||||| | |||||||| || || || |||||||| || || || ||| Sbjct 5421110 GGTGAGCTCTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTC 5421051 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | || | || || |||||||| | || || || || || || || Sbjct 5421050 AACATTGCCAGCTACTCTCTACTCACCTACATGATCGCACACGTCACCGGTCTGAA 5420995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399441458273025