Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq40 470 1e-127 seq64 122 6e-23 seq18 122 6e-23 seq19 82.4 6e-11 >seq40 Length=19741185 Score = 470 bits (520), Expect = 1e-127 Identities = 451/578 (78%), Gaps = 0/578 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||| ||||||||||||||| |||||||||| | |||| Sbjct 3618150 AAAACACCTTCATATTAATCTTTCTTTTCATATACTTCAAATGTGTACTTAATGCCTTTC 3618091 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 ||||| || |||| ||||| ||| | ||| || || | | ||||||||||||||| | | Sbjct 3618090 TCTTCCTGGACATCAGAAACAACCCCTGGGTAGTCAGTAAGAAGTTTGTATTTCTCCAAA 3618031 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| |||||||||||||| || |||||||| || |||||||||||| Sbjct 3618030 TCAATTTCTGGAAAAAATGTGTCACATTCAAATTCCTGCATGATTCTTGTCACAAACAGT 3617971 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 | | || || || | || || |||| | ||||||||| || ||||| | |||||| Sbjct 3617970 CTCAAATGGCCCGGCTTGTTCGTAACTTCCTGATACACAGAGCTGCCTCCCACTATCCAA 3617911 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| |||||||||| |||||||||||| || ||||||||||| |||||||| | | Sbjct 3617910 ACCATGTCCACTTTATTTGTTAATTCTGGCTGCTCAGTAAGTTTTAAGGCATCATCAAGA 3617851 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || || | |||||||| || |||| |||| || || || | |||||||| | | Sbjct 3617850 CTTTTGGCAAGAAAATGAGTTCCTGTTGGAGGCTCTTTGAGCTCTCTACTGAGAACTAAA 3617791 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 || ||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 3617790 TTGATTCTGCCTTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCATGTCTTCCTACCC 3617731 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 || ||||| | |||||||||| || ||| ||||| || || |||||| | | ||| | Sbjct 3617730 ATTATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTGGTGGTCATTTTCCGAAAACAT 3617671 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 | || ||||| | ||| ||||| |||| | || | ||||| ||||||||||| Sbjct 3617670 GTGAATTCATTTCTGAGTGGGGGCCAGGGCAGCTCCCCGTTCTTGCCGATGCCCATGTTC 3617611 Query 4495 TGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || | || || ||||| ||||| || | ||||||| Sbjct 3617610 TGTGACACGGCGACAATACAGTTCAGCGGGCGAACCAT 3617573 >seq64 Length=12214461 Score = 122 bits (134), Expect = 6e-23 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4167 ATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTG 4226 ||||||||| || ||||| | |||||| |||||||| |||||||||| |||||||||||| Sbjct 7689405 ATACACAGAGCTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGCTG 7689464 Query 4227 TTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 || |||||||||| |||||||| | ||| || || | ||||||||||| Sbjct 7689465 CTCAATAAGTTTTAAGGCATCATCAAGACTTTTGGCAAGAAAATGAGCTC 7689514 Score = 111 bits (122), Expect = 1e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||||||| |||||||||||||| || ||||| Sbjct 7687364 AAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACATTCAAATTCCTGCAT 7687423 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 ||| || |||||||||||| | | || || ||| | ||||| |||| || Sbjct 7687424 GATTCTTGTCACAAACAGTCTCAAATGGCCTGGCTTGTTCATAACTTCCTT 7687474 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | ||| |||||| | |||||||| || ||||||||||| Sbjct 7697426 CTTGAGCTCTCTACTGAGAACTAAATTGATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 7697485 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||| ||||| | |||||||||| || Sbjct 7697486 AATGGAGAACCACGTCTTCCTACCCATTATCACCAGATTCTGTTTACCT 7697534 Score = 95.1 bits (104), Expect = 9e-15 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||| |||||||||||||||||||||||||| | |||| Sbjct 7681437 AAAACACCTTAATATTAATCTTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 7681496 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATA 4046 ||||| || |||| ||||| ||| | ||| || Sbjct 7681497 TCTTCCTGGACATCAGAAACAACCCCTGGGTA 7681528 >seq18 Length=30093284 Score = 122 bits (134), Expect = 6e-23 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || || || || ||||| |||| || ||||||||||| | | || || Sbjct 11523964 ACAATGGGCGTGACACAGGTACAGCCCACAGCTACCAGCATCTTCTCCAATCGGAAAGAG 11523905 Query 27012 TTAGGGCAGGGTTG--ATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | || || || | | || | || |||| || || |||||||| ||||| ||||| | Sbjct 11523904 T--GGACACAGTGGCCAGGCTCCTTTCGCAGGACCAGGATCTCTTGCTGGATGGGGACGG 11523847 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 |||||||||||| ||| || ||||| || |||| ||||| || |||| ||| ||||| | Sbjct 11523846 AGTTCATGTGGTGGTCCACCTTCCCCTCGGCATCCACACAGCCCAAGTGGCGGCACTTGG 11523787 Query 27130 CTTCCCAAATCACA-GAGGGATATCTATC 27157 | ||||| || | | |||||| |||| || Sbjct 11523786 CCTCCCAGATGATAGGAGGGA-ATCTCTC 11523759 >seq19 Length=29725166 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 5425047 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 5425106 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | | || || || | || || || || || || || |||||||| | Sbjct 5425107 CTTCTCTGGCGGAGAATCCCAGGCTGTCCAAGAAATCTCGGGACCCGTTGGCATCCCAGA 5425166 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 5425167 TTTTCACTCC 5425176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361194646689095