Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq61 260 2e-64 seq119 141 1e-28 seq37 111 2e-19 seq28 102 1e-16 >seq61 Length=12918418 Score = 260 bits (288), Expect = 2e-64 Identities = 624/931 (67%), Gaps = 27/931 (3%) Strand=Plus/Plus Query 23783 GTTTCTTTAAAAGTCAACATCTAAAG----AAAAATGATTGTCTTCTTGA---GACATAA 23835 ||||||||| ||||| |||| || | ||||| ||| ||| | || ||||| | Sbjct 2373263 GTTTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCA 2373322 Query 23836 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 23895 ||||||| | || || || | || | || || || || ||||| || ||||| | || Sbjct 2373323 CTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 2373382 Query 23896 ATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT 23955 | ||||| |||||||| || ||||||| || | | | | | || || | | Sbjct 2373383 AGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCT 2373442 Query 23956 CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTC 24015 | || | ||| || | ||||| || ||||| |||||| | || ||||| | Sbjct 2373443 CCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCC 2373502 Query 24016 CTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTG 24075 | || || || || || | ||| ||||||| || || ||||| || || || ||| Sbjct 2373503 CAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTG 2373561 Query 24076 TT-ATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 24134 || || | | ||| | | || ||| | | || |||||| ||||||| Sbjct 2373562 AGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGG 2373621 Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || || ||||| | |||||| || || ||||| | ||| |||||||| ||||| Sbjct 2373622 CAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGG 2373681 Query 24195 CCGGGCATTAGGCCACGCTTTTTA-AGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| || || | ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 2373682 CCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAA 2373741 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || ||||| ||||||||||| || | | | |||||| || || || || ||| | Sbjct 2373742 GATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGC-CTCTC-TGTGT 2373798 Query 24314 CCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||| | | ||||| || |||||||| || |||||||||||||| || ||||||| Sbjct 2373799 CCAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCAT 2373858 Query 24370 TAAAGAGATAGtttt---tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||| ||||| || | || ||||||| || |||||| | | ||||| | Sbjct 2373859 TGAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGT 2373915 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 ||||||| || || ||||||| |||| ||||||| || |||||||| | || || | Sbjct 2373916 ACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTG 2373975 Query 24487 TAATCTGTACTTCTATACAAAA---TCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | ||||| |||||| | ||| | | || | | || ||| | || || ||||| Sbjct 2373976 TGATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-G 2374034 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 ||| || || || |||| | || | | || || | ||||| || | || | Sbjct 2374035 GGGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGT 2374094 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 || | | ||| || || || | ||||||| || | ||||| || || ||||| | Sbjct 2374095 CCCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGG 2374154 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATA 24694 |||| | ||||| | |||||| || || || Sbjct 2374155 CCTTCCTGTACATCTGCCAGATATCGTGGTA 2374185 >seq119 Length=4927305 Score = 141 bits (156), Expect = 1e-28 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 3059027 ACCTGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATG 3058968 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| ||||| | | ||| Sbjct 3058967 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAA 3058908 Query 53270 CTATTTCTAAGACCGTAT 53287 || ||||||| ||| ||| Sbjct 3058907 CTGTTTCTAATACCATAT 3058890 >seq37 Length=21270769 Score = 111 bits (122), Expect = 2e-19 Identities = 103/130 (79%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 24151 GTAGAC---CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 24207 |||||| |||| || || ||||| | ||| |||||||| ||||| || ||||| || | Sbjct 14837804 GTAGACTCACCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTC 14837863 Query 24208 CACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 | | ||||| ||||| ||||| |||||||| || ||||||||||| || ||||| |||| Sbjct 14837864 CTCTTTTTTTCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTG 14837923 Query 24268 CCGCAAAGGC 24277 |||| || || Sbjct 14837924 CCGCGAAAGC 14837933 >seq28 Length=26224161 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 21882816 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCTTT 21882757 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 |||||||| || | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 21882756 AGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGC 21882698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593626270575600