Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq77 271 9e-68 seq19 176 5e-39 seq40 147 3e-30 >seq77 Length=10001809 Score = 271 bits (300), Expect = 9e-68 Identities = 609/901 (68%), Gaps = 13/901 (1%) Strand=Plus/Minus Query 176346 GCTCAGGTGGTACCCGCCCTGTA-TCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 176404 |||||| || | ||| | ||||| ||| || || ||| | | || || ||||||| | Sbjct 995022 GCTCAGTTGCTGCCCCCGCTGTACTCT-CTGGTATTTGTGGTGGGTCTGCTGGGCAACGT 994964 Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464 | |||||| | || | | | ||||| || |||| | | || ||||| || || Sbjct 994963 GGTCGTGGTGGTGATCCTGACCAAATACAGGAGACTCAAGATAATGACCAACATCTTCCT 994904 Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524 | | || |||| || ||||||||||| ||||| || ||| ||| ||| |||| ||||| Sbjct 994903 GCTCAATCTGGCTATTTCTGACTTGCTCTTTCTGTTCACTCTGCTTTTTGGGATTCACTA 994844 Query 176525 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 176584 | || | || |||| ||| ||||| | | | ||||||| | ||| ||| | Sbjct 994843 TGTTCG---GTGGAATGAGTGGGTATTTGGCAATATCATGTGTAAGGTCCTCTCGGGGCT 994787 Query 176585 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 176644 | ||||||| ||||||| | |||||| ||||||| |||| || ||||||| || Sbjct 994786 TTATTACATGGGTTTGTACAGTGAAATCTTTTTCATCATCTTGCTGACCATAGACAGATA 994727 Query 176645 TCTAGCTGTTGTCTATGCTGTAACTG-CTTTGAGGTTTAGAACAGTAACCTGTGGCATAG 176703 | | ||||||||| |||| || || | || ||| | || || || | ||| || Sbjct 994726 TTTGGCTGTTGTCCATGCAGTGTTTGCCCTTCAGG-CCCGGACGGTCACTTTTGGTATCA 994668 Query 176704 TTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTC 176763 | | | |||| | |||||||| ||||||||| | ||||||||||||| | || | Sbjct 994667 TCAGCAGTGTGTCTACCTGGTGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTCATGTTCC 994608 Query 176764 ATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCC-AGAGATGTCT 176822 | |||||||| ||| | | || ||| | ||||| | |||| Sbjct 994607 AAAAGTCTCAAGATGAGTTTGGACAGTATGTCTGCAGCCCTGATTACCCTAAGGATGAAG 994548 Query 176823 ACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCT 176882 | | || |||| ||| ||||| | | ||| ||| || |||| | ||||| Sbjct 994547 A-AGATACCTGGAAGCGGTTCCACGCTCTGAGAATGAATATCTTTGGTCTTGCTCTGCCT 994489 Query 176883 CTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGC 176942 ||||| |||||| | |||||||| | ||| || | || ||| |||| |||| | Sbjct 994488 CTGCTTGTTATGGTTATCTGCTACACAGGAATCATTAAAACGCTGCTGAGATGCCCTGGG 994429 Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002 | |||||| | || ||||| | ||||| |||||||||||||||| || ||| |||| Sbjct 994428 AGAAAGAAGCAAAAAGCCATTCGACTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTC 994369 Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 177062 ||||||||||||||| | |||||||| || ||| | | ||| | |||||| Sbjct 994368 TGGACACCCTACAACCTAGTTCTCCTGCTCTCTGCGTATCAATC-TGTCTTCTTTGAGGA 994310 Query 177063 CAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTA 177121 ||| |||| |||| | ||||| |||| ||| | | || | | ||||| Sbjct 994309 CAGCTGTGAGAGAAGCAAACAGCTGGACCTGGCCATGCAGGTGACTGAGGTGATCGCCTA 994250 Query 177122 CACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGAC 177180 ||| || || || ||||||| ||||||||||| || ||||| |||| ||| ||||| Sbjct 994249 CACGCATTGCTGTGTCAACCCTGTGATCTACGCCTTTGTGGGTGAGAGGTTCCAGAAG-T 994191 Query 177181 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 177240 ||||| |||||| ||| ||| ||||| | |||||||| | || ||||||||||||| Sbjct 994190 ACCTGCGCCACTTTTTCTACAGGCACGTGACTATCTACCTAGGAAAATACATCCCCTTCC 994131 Query 177241 T 177241 | Sbjct 994130 T 994130 Score = 271 bits (300), Expect = 9e-68 Identities = 609/901 (68%), Gaps = 13/901 (1%) Strand=Plus/Minus Query 9460 GCTCAGGTGGTACCCGCCCTGTA-TCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATAT 9518 |||||| || | ||| | ||||| ||| || || ||| | | || || ||||||| | Sbjct 995022 GCTCAGTTGCTGCCCCCGCTGTACTCT-CTGGTATTTGTGGTGGGTCTGCTGGGCAACGT 994964 Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578 | |||||| | || | | | ||||| || |||| | | || ||||| || || Sbjct 994963 GGTCGTGGTGGTGATCCTGACCAAATACAGGAGACTCAAGATAATGACCAACATCTTCCT 994904 Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638 | | || |||| || ||||||||||| ||||| || ||| ||| ||| |||| ||||| Sbjct 994903 GCTCAATCTGGCTATTTCTGACTTGCTCTTTCTGTTCACTCTGCTTTTTGGGATTCACTA 994844 Query 9639 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 9698 | || | || |||| ||| ||||| | | | ||||||| | ||| ||| | Sbjct 994843 TGTTCG---GTGGAATGAGTGGGTATTTGGCAATATCATGTGTAAGGTCCTCTCGGGGCT 994787 Query 9699 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 9758 | ||||||| ||||||| | |||||| ||||||| |||| || ||||||| || Sbjct 994786 TTATTACATGGGTTTGTACAGTGAAATCTTTTTCATCATCTTGCTGACCATAGACAGATA 994727 Query 9759 TCTAGCTGTTGTCTATGCTGTAACTG-CTTTGAGGTTTAGAACAGTAACCTGTGGCATAG 9817 | | ||||||||| |||| || || | || ||| | || || || | ||| || Sbjct 994726 TTTGGCTGTTGTCCATGCAGTGTTTGCCCTTCAGG-CCCGGACGGTCACTTTTGGTATCA 994668 Query 9818 TTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTC 9877 | | | |||| | |||||||| ||||||||| | ||||||||||||| | || | Sbjct 994667 TCAGCAGTGTGTCTACCTGGTGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTCATGTTCC 994608 Query 9878 ATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCC-AGAGATGTCT 9936 | |||||||| ||| | | || ||| | ||||| | |||| Sbjct 994607 AAAAGTCTCAAGATGAGTTTGGACAGTATGTCTGCAGCCCTGATTACCCTAAGGATGAAG 994548 Query 9937 ACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCT 9996 | | || |||| ||| ||||| | | ||| ||| || |||| | ||||| Sbjct 994547 A-AGATACCTGGAAGCGGTTCCACGCTCTGAGAATGAATATCTTTGGTCTTGCTCTGCCT 994489 Query 9997 CTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGC 10056 ||||| |||||| | |||||||| | ||| || | || ||| |||| |||| | Sbjct 994488 CTGCTTGTTATGGTTATCTGCTACACAGGAATCATTAAAACGCTGCTGAGATGCCCTGGG 994429 Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116 | |||||| | || ||||| | ||||| |||||||||||||||| || ||| |||| Sbjct 994428 AGAAAGAAGCAAAAAGCCATTCGACTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTC 994369 Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 10176 ||||||||||||||| | |||||||| || ||| | | ||| | |||||| Sbjct 994368 TGGACACCCTACAACCTAGTTCTCCTGCTCTCTGCGTATCAATC-TGTCTTCTTTGAGGA 994310 Query 10177 CAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTA 10235 ||| |||| |||| | ||||| |||| ||| | | || | | ||||| Sbjct 994309 CAGCTGTGAGAGAAGCAAACAGCTGGACCTGGCCATGCAGGTGACTGAGGTGATCGCCTA 994250 Query 10236 CACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGAC 10294 ||| || || || ||||||| ||||||||||| || ||||| |||| ||| ||||| Sbjct 994249 CACGCATTGCTGTGTCAACCCTGTGATCTACGCCTTTGTGGGTGAGAGGTTCCAGAAG-T 994191 Query 10295 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 10354 ||||| |||||| ||| ||| ||||| | |||||||| | || ||||||||||||| Sbjct 994190 ACCTGCGCCACTTTTTCTACAGGCACGTGACTATCTACCTAGGAAAATACATCCCCTTCC 994131 Query 10355 T 10355 | Sbjct 994130 T 994130 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 9554 TCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTT 9613 |||||| ||| || | ||| | || | ||| |||| | |||||| |||| || || | Sbjct 1054760 TCAAAAGCCTGACCAGCATTTACCTCCTCAACCTGGCCGTTTCTGACCTGCTCTTCCTCT 1054819 Query 9614 TAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTT 9673 | ||| |||| || ||||| | || | | || | || | |||| ||| ||| | Sbjct 1054820 TCACTCTGCCCTTCTGGATTGATTACAA---ACTGAAGGATAACTGGATTTTCGGTGATA 1054876 Query 9674 CCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCA 9733 || |||||||| | ||| || | | |||| | | ||||||| || |||||| | Sbjct 1054877 CCATGTGTAAATTCCTCTCAGGGATTTATTACGTAGGATTGTACAGTGAGATCTTTTTTA 1054936 Query 9734 TCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGT 9779 |||||||||| ||| | |||||||| |||| ||||| | ||||| Sbjct 1054937 TCATCCTGCTGACAATCGACAGGTACTTAGCCATTGTCCACGCTGT 1054982 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 176440 TCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTT 176499 |||||| ||| || | ||| | || | ||| |||| | |||||| |||| || || | Sbjct 1054760 TCAAAAGCCTGACCAGCATTTACCTCCTCAACCTGGCCGTTTCTGACCTGCTCTTCCTCT 1054819 Query 176500 TAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTT 176559 | ||| |||| || ||||| | || | | || | || | |||| ||| ||| | Sbjct 1054820 TCACTCTGCCCTTCTGGATTGATTACAA---ACTGAAGGATAACTGGATTTTCGGTGATA 1054876 Query 176560 CCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCA 176619 || |||||||| | ||| || | | |||| | | ||||||| || |||||| | Sbjct 1054877 CCATGTGTAAATTCCTCTCAGGGATTTATTACGTAGGATTGTACAGTGAGATCTTTTTTA 1054936 Query 176620 TCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGT 176665 |||||||||| ||| | |||||||| |||| ||||| | ||||| Sbjct 1054937 TCATCCTGCTGACAATCGACAGGTACTTAGCCATTGTCCACGCTGT 1054982 >seq19 Length=29725166 Score = 176 bits (194), Expect = 5e-39 Identities = 136/162 (84%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 || || |||| ||| |||| ||||||||| || || ||||||||||| |||||||||||| Sbjct 5420998 AGACCGGTGACGTGTGCGATCATGTAGGTGAGTAGAGAGTAGCTGGCAATGTTGAAGGGC 5421057 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || | |||||||||||||||||||||||| ||| | || Sbjct 5421058 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGAGAGCTCACCGTTCACC 5421117 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 || ||||||||||| ||| |||||| || || ||||||||| Sbjct 5421118 ACATAGAACTGGCAAAGGGCGTGGCATGGAGGTAGGGCCATG 5421159 >seq40 Length=19741185 Score = 147 bits (162), Expect = 3e-30 Identities = 127/157 (81%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | ||| |||| ||||||||| || | |||||| || | ||||||||| | ||| Sbjct 7972968 CAGCGACGCAGACTCAGCCTGAGGGTCTTCAACTTTTCTCCTAAGGAGTTCACATGCTCC 7972909 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | || |||||||| |||||||||||||||| |||||| ||||||||| Sbjct 7972908 TTGAT---GTCTGGACTTTGGTTCTCAGCCTGGGGCATCACCTTCTCCAGATAAAACTGG 7972852 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 7972851 ATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 7972815 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 137941 GTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATGGCCTTGTAGACC 138000 || |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct 7975153 GTAATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAATTCGCTCATGGCTTTGTAGACT 7975094 Query 138001 CCTTTTTCCTGGAGCT 138016 ||||| || ||||||| Sbjct 7975093 CCTTTCTCTTGGAGCT 7975078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589982055793800