Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq81 304 2e-77 seq17 140 4e-28 seq55 98.7 1e-15 >seq81 Length=9274210 Score = 304 bits (336), Expect = 2e-77 Identities = 270/338 (80%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| |||||||||||||||| | | | | ||| || ||||| |||||||||||||| Sbjct 7708280 AGCAGCGCCTCGATGTCGGGCTGGATGTCGATGGTGGGGAAGCGGCGGCTGTACCTGCGC 7708221 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| |||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 7708220 ACGGGCACGCCGTCGGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 7708161 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| |||||| ||| ||||| | |||||||| Sbjct 7708160 CACACGGGAGACCAGGTGATGAGCTTTGGGTCGGTCATGAGCGACGTGGCATCGTCGCTG 7708101 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||||| || ||||| ||||| ||||| || ||| || ||||| ||| Sbjct 7708100 GGCGCGGGCAGGGCCTCCCGCAGGAAAGCGAAAAGCGGGTGCGCCTGCGCGCCGTTCACC 7708041 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| ||||| ||||| |||||||| ||| || || || |||| ||| Sbjct 7708040 TCGCACTTCTCGAAAAGCATGAAGTTGGGCTCGAACCCGCCGCCCGGGCGAACGTACTTG 7707981 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| | ||| ||||| Sbjct 7707980 AGGGAATTCAGGATCTCTTCGTTCTTCGTGTTCTCCTG 7707943 Score = 165 bits (182), Expect = 1e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || || || ||||| ||||| | || | || Sbjct 7707723 CCTGATGCCCGAACTGATTGCACGGGAAGCCGAGTACCACCAGGCCCCGCGGCCCGAAGC 7707664 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||||||| |||||||||||||| |||||||| || | |||||||| ||||| | Sbjct 7707663 GCTGCTGCAGCTCATTCATCTGAGTGTAGTCCCGGACGGTTGTGCCTCAGAGCGACGCCA 7707604 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||| | | | |||| | ||| | || || || ||| Sbjct 7707603 CGTTCTCAATGAGCAGCACCTTGCCCTGCAGGGAGCCCAGGCTTATGGGCTCCCCGCCGA 7707544 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||||| ||| || Sbjct 7707543 CCAGCGGGCGCGCCGAGAAGGCGTGCACGGA 7707513 >seq17 Length=30559220 Score = 140 bits (154), Expect = 4e-28 Identities = 210/288 (73%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 22056394 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 22056336 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 22056335 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 22056276 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| ||||||||| ||| | || | |||| ||||| Sbjct 22056275 GCGGCTCGCTGGGCAAGAAGCAG-CTCGACCCGAGCCGCATCCGGCTCATCCGCCACTAC 22056217 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| ||||| ||| | | ||||| |||||||||| |||| ||| Sbjct 22056216 GTGCAGCTGCTCTACCCGCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTTGTGGG 22056158 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 |||||||||||||||||||||||| |||||| || |||||| Sbjct 22056157 CAAGCTGGACGAGCGCTGCCGGCGCCGC--GACACGGAGCAGAGGCGC 22056112 >seq55 Length=14199495 Score = 98.7 bits (108), Expect = 1e-15 Identities = 222/330 (67%), Gaps = 4/330 (1%) Strand=Plus/Minus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||| | | | | | ||||||| || | ||||||| | ||| | |||| || Sbjct 9046427 GATGTCCGGCCCTATGTCGATGGTCTGGAAGGTGCGGCTGTAGCGGCGGAAGGGCTCCCC 9046368 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | || | | ||||||||| |||||||||||||| || ||| | ||| || Sbjct 9046367 CTCTGGCCCGATAAGGAACTTCTCAAAGTTCCAGGCCACATCCGAGCGCCGCACGGGGCT 9046308 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| |||| || ||| ||| ||| ||| | ||||||| |||| | || | Sbjct 9046307 CCAAATGATGAACTTGGGATCGGTCATGAGAGAAGAGGGGTCGTCG-TAGGGGTAGG-GG 9046250 Query 83248 GGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTC 83305 || | || | ||| ||||||||| ||||| | | ||| || ||||| |||||| Sbjct 9046249 AGCTTATCCTTCAGGTAGGCGAAGACTGGATGCTCATTCTGACCATTCACCTCACACTTC 9046190 Query 83306 TCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGC 83365 | | || ||||| | |||| ||| || ||| || ||||||| ||| ||| | Sbjct 9046189 TGGGCAAGGGTAAAGGTGGGCTGGAATCCACCCCCCGGGCGGACGTACTTGAGGCTGTTC 9046130 Query 83366 AAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | |||||| ||||||| ||| |||||| Sbjct 9046129 AGGATCTCCTCATTCTGACAGTTCTCCTGG 9046100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608699050063800