Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1111 127 2e-24 seq255 111 1e-19 seq96 84.2 2e-11 seq46 84.2 2e-11 seq94 82.4 6e-11 >seq1111 Length=9394 Score = 127 bits (140), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 20950 CCCCT-CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | ||| ||| ||||| |||||||| || || ||||| ||||||| Sbjct 92 CCCCTGCGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 151 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||||||||||||| |||| || |||||||||| || Sbjct 152 AGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGG 211 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| || ||| | | | | || |||| |||||| Sbjct 212 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACC 271 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 272 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 318 >seq255 Length=264719 Score = 111 bits (122), Expect = 1e-19 Identities = 159/223 (71%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||| ||| |||| |||||||| || || ||||| ||||| | ||||| ||| | ||| Sbjct 227508 AGCCCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCC 227567 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||||||| || |||| || | |||||| ||| | | |||||||||||| Sbjct 227568 TCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCC 227627 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | | || |||| || ||| | | ||| |||||| Sbjct 227628 TGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTC 227687 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCTC 21185 ||||| || | || || ||||| |||||||| | || ||||| Sbjct 227688 TTGCCCGTCAGGGTCTTCACAAAGATTTGCATCTCTGCATCTC 227730 >seq96 Length=7287561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| |||||||| | || ||||| | || || ||||| || | || Sbjct 3530333 AGCACCAGATGCAGGGTGGACTCTTCCTGGATGTTGTGGTTCGAGAGGGTGCGGCCACCC 3530392 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||||||||||||| |||| || | ||| ||||| | | |||||||||||| Sbjct 3530393 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGATGGTCTGGCAGGATGCCTTCCTTGTC 3530451 >seq46 Length=16750451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| ||||| || ||||| ||||| | |||||| | | || Sbjct 1815904 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 1815845 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 1815844 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 1815786 >seq94 Length=7567239 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| || ||||| || |||||||| ||||| | || || || | || Sbjct 6929606 AGGACAAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 6929665 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 6929666 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 6929725 Query 21084 GCGATCTT 21091 |||||| Sbjct 6929726 TGGATCTT 6929733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422193095982020