Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq61 242 4e-59 seq1111 150 2e-31 seq255 136 4e-27 seq37 114 1e-20 seq46 111 2e-19 seq49 105 7e-18 seq96 104 2e-17 seq121 102 8e-17 seq94 102 8e-17 seq100 87.8 2e-12 seq21 87.8 2e-12 seq13 87.8 2e-12 >seq61 Length=12918418 Score = 242 bits (268), Expect = 4e-59 Identities = 447/645 (69%), Gaps = 29/645 (4%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| |||||||| | || | || | |||||| | | |||| || Sbjct 2374236 GAGCCACTGCTGCAGGAGAACCCGCTGCGCTCCGCCGTCTTCCCCGTCGAGTACCACGAT 2374177 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||| |||||||||||||| |||||||| | |||||| |||| ||| Sbjct 2374176 ATCTGGCAGATGTACAGGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAAGTGGGCCTT 2374117 Query 116696 TCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||||| | ||| || |||| | | || | ||||| | | |||| ||| Sbjct 2374116 TCCAAGGACATCCAGC-ACCGGGACGCCCTCAAGCCCGACGAGAGGTACTTCACATCGCA 2374058 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC---- 116810 | | ||||| || ||||||||| |||||||||||||| ||||| |||||||||| Sbjct 2374057 CATCCTGGCTTTCTTCGCCGCC-CCGACGGCATCGTCACTGAGAACCTGGTCGAGCTAAG 2373999 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 |||| || || || || ||| | | || || || || ||||| |||||||| | |||| Sbjct 2373998 GTTTAGC-CAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTTCAAAATGCCA 2373940 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC-------GTGCGC 116923 ||| ||| ||||| |||||||| ||||| || || ||| ||| Sbjct 2373939 CGGAAAACAGACACTCTGAAATGTACAGTCTCCTCACTGATACTTACAATAAAGATGC-- 2373882 Query 116924 TCTTCGGA--GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAG 116981 | ||| ||| || ||| || || || || || || ||||| || ||||| Sbjct 2373881 -CAAAGGAAGGGAAAACCTC------TTCAATGCTATTGAAACAATGCCTTGTGTCAAGA 2373829 Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| || | |||| | |||||||| | || | || || || Sbjct 2373828 AGAAGGCGGACTGGGCCTTGTG-GGGATTGGACACAGAGAGG-CTCCCTAGGAGAACGTG 2373771 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | |||| || ||||| || || || |||||||||| ||| || || | ||||| | Sbjct 2373770 TCCTGGCTTTTGCGGCAGTGGAAGGGATCTTCTTTTCTGGCTCGTTTGCATCGATATTCT 2373711 Query 117102 GGCT-CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 |||| || ||| | || || ||||| ||||| || || ||| || || || |||| Sbjct 2373710 GGCTGAAAAAAAGGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGG 2373651 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 || |||||| | || || |||||||| || || ||||||| ||| Sbjct 2373650 GATGAGGGTTTCCACTGTGACTTTGCTTGCCTGATGTTCAAACAT 2373606 >seq1111 Length=9394 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| |||| || || ||| Sbjct 318 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 259 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | ||||| || |||||||| |||||||| Sbjct 258 GACACCATTGAGAATATCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 199 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||||||||||||||||| || | ||||||||| ||||||||| Sbjct 198 CAGCCTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 139 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||| ||| |||| |||||||| | | ||||| Sbjct 138 ATCCAGAAAGAGTCCACCCTGCATCTGGCGCTGCGC 103 >seq255 Length=264719 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || |||||||| ||||||||| || | || || |||| Sbjct 227719 ATGCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCAAGGTAGAGGCCAGT 227660 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | ||||| | ||||| || ||||||| |||| || Sbjct 227659 GACACCACTGAGAATG-TCAAAGCTAAAATCCAGGACAAGGAAGGCATCCTGCCGGATCA 227601 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | | ||||||||||||||| || | | ||||||| |||||||| Sbjct 227600 GCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCACACCCTCTCAGACTACAA 227541 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||| ||| |||| ||||| || | | ||||| Sbjct 227540 CATCCAGAAAGAGTCCACCCTGCACCTGGGGCTGCGC 227504 >seq37 Length=21270769 Score = 114 bits (126), Expect = 1e-20 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||||| ||||||||||| || ||||| | |||||||| | |||| ||| Sbjct 14840700 GAGCCACTGCTGCGGGAGAACCCCCGGCGCTTCGTCGTCTTCCCCATCGAGTACCACGAC 14840641 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||| || |||||||||||||| |||||||| | ||||||||| Sbjct 14840640 ATCTGGCAGATGTATAAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGGT 14840588 Score = 100 bits (110), Expect = 3e-16 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||| |||||||||| | ||| ||||||| | | || | | ||||| | Sbjct 14840393 AGGTGGACCTTTCCAAGGACATCCAGC-ACTGGGACGCCCTCAAGGCCGACGAGAAGTAC 14840335 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| |||| | |||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 14840334 TTCATATCGCACATCCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAATGAGAACCTG 14840275 Query 116804 GT 116805 || Sbjct 14840274 GT 14840273 >seq46 Length=16750451 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||||||| | |||||||| | || |||| || ||||| |||||||| Sbjct 1815786 GATAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAA 1815845 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| ||||| | || || Sbjct 1815846 GATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTG 1815905 Query 40903 CGCTTGAGGGGCGG 40916 ||| ||||||| || Sbjct 1815906 CGCCTGAGGGGTGG 1815919 >seq49 Length=15761451 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | | |||| | ||||||||| || | | || ||| Sbjct 14388361 ATGCAGATCTTTGTGAAGACCTTGATGGGCGAGACCATCACCCTCCAGGGGGAGACCAGT 14388302 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | || |||| | ||||| | ||||| ||| ||||||| | |||||| Sbjct 14388301 GACACCACTGAGACTGTCAAAGCCAAAATCCAGGACAAGGAGTGCATCCCGCCCGACCAG 14388242 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 | | || || | || |||||||||||||| || | ||||||||| |||||||| Sbjct 14388241 TAGCATCTGATGTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCGCACTACAAC 14388182 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||| ||| |||| ||||| || ||| || || Sbjct 14388181 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGTGC 14388146 >seq96 Length=7287561 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || | || ||| |||||| || || | || || || Sbjct 3530544 ATGCAGATCTTTGTGAAGACCCTGATGG-CAAGACCATCCCCCTCAAGGTAGAGCTCAGT 3530486 Query 40750 GACAGCGTGCAAACGCTCAAGGA-AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | | |||| | |||||| | ||||| || ||||||| | ||||| Sbjct 3530485 GACACATTGGAGAATATCAAAGCCAAAAATCCAGGACAAGGAAGGCATCCTGCCAGACCA 3530426 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||||||||||||||||| | | ||||||||| || |||| Sbjct 3530425 TCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGGTGGCCGCACCCTCTCGAACCACAA 3530366 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 ||||||| | ||| |||| |||||||| ||| ||||||| Sbjct 3530365 CATCCAGGAAGAGTCCACCCTGCATCTGGTGCTGCGCTT 3530327 >seq121 Length=4665274 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | || || ||| |||||||| | |||||||| | || |||| | Sbjct 2221533 TCAAGGCCAAGATCCAGGATAAGGAGAGCATCCCCCCTGACCAGCAGAGGCTGATCTTTG 2221474 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| || | |||||||| ||||||||||||||||| || ||| Sbjct 2221473 CCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCCA 2221414 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | ||||| | || ||||| ||||||| || Sbjct 2221413 CTCTGCACTTGGTCCTGCGCCTGAGGGGTGG 2221383 >seq94 Length=7567239 Score = 102 bits (112), Expect = 8e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || || ||||||||| | |||||||| | ||||||| || ||||| |||||||| Sbjct 6929724 GATAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAA 6929665 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || ||||||||||| ||||| ||| | || |||||||| || || Sbjct 6929664 GATGGCCGCACTCTTTCTGACTACAACATTCAGAAAGAGTCGACCCTGCATCTTGTCCTG 6929605 Query 40903 CGCTTGAGGGGCGGCGGCT 40921 || ||||||| ||| ||| Sbjct 6929604 CGTCTGAGGGGTGGCTGCT 6929586 >seq100 Length=6927380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || || | ||||||||||||||||| || | ||| Sbjct 2821706 GGCATCCCGCCGGACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGC 2821647 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| ||||||||||||||||| Sbjct 2821646 ACCCTCTCGGACTACAACATCCAGAA 2821621 >seq21 Length=29177037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || ||||| || || ||||| |||| |||||| || Sbjct 16234867 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 16234808 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| |||||| || || | || || || || || || | || Sbjct 16234807 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 16234748 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || | |||| || || ||||| || || || | || || | |||||| Sbjct 16234747 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTAC 16234688 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||| |||||| |||| || ||||| || ||| Sbjct 16234687 AACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTG 16234652 >seq13 Length=31987310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || ||||| || || ||||| |||| |||||| || Sbjct 25852720 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 25852661 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| |||||| || || | || || || || || || | || Sbjct 25852660 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 25852601 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || | |||| || || ||||| || || || | || || | |||||| Sbjct 25852600 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGACGTACTTTGTCTGACTAC 25852541 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||| |||||| |||| || ||||| || ||| Sbjct 25852540 AACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTG 25852505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515136475117200