Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 2e-14 >seq40 Length=19741185 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||| | | |||| ||||| || ||||| ||||| || || ||||| || | ||| Sbjct 16087856 TGGTGGTATTTTGTATCTAAAGGAATTGAATATTTGGACACAGTGTTTTTTATTTTGAGG 16087797 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || ||| ||| || || ||||||||||| | ||| |||||||| | Sbjct 16087796 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACCATGTTTACGTTG 16087737 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| | || || ||||| Sbjct 16087736 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGTCA 16087702 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||| | ||||| || || || || ||||||||| | || ||||| Sbjct 16086634 GCATTTTTCGGAGCCCAGATGAATTCCTTCATTCACGTGATTATGTACTCATACTATGGG 16086575 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || | || ||| ||| | ||||||| |||||| ||||||||||| || || || || Sbjct 16086574 CTGACTGCACTTGGCCCTTGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCAT 16086516 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 16086515 GCTGCAGCTGGT 16086504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923048569213800