Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq12735 113 5e-20 seq238 102 9e-17 seq229 100 3e-16 seq67 98.7 1e-15 seq14 98.7 1e-15 seq7 98.7 1e-15 seq255 91.5 2e-13 >seq12735 Length=1010 Score = 113 bits (124), Expect = 5e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| ||||||| |||| ||||||||||||| |||| |||||||||||||||| |||||| Sbjct 538 AAAATTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTC 479 Query 60119 ACCACTATACTACCGAGGATTG 60140 ||||||||||||||||||| || Sbjct 478 ACCACTATACTACCGAGGACTG 457 >seq238 Length=377707 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 237667 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 237726 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 237727 ACTATACTAACGAGGA 237742 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 239519 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 239578 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 239579 TACTAACGAGGA 239590 >seq229 Length=492751 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 244596 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 244655 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 244656 ATACTAACGAGGA 244668 >seq67 Length=11548157 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10630346 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10630405 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10630406 TACTAACGAGGA 10630417 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10633228 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10633287 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10633288 TACTAACGAGGA 10633299 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10635182 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10635241 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10635242 TACTAACGAGGA 10635253 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10644074 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10644133 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10644134 TACTAACGAGGA 10644145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10655737 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10655796 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10655797 TACTAACGAGGA 10655808 Score = 96.9 bits (106), Expect = 4e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| Sbjct 10612830 GGGAATCGAACCCTGGCCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAG 10612771 Query 60136 GAT 60138 ||| Sbjct 10612770 GAT 10612768 >seq14 Length=32092909 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 20842091 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20842032 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 20842031 TACTAACGAGGA 20842020 >seq7 Length=46948058 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 38697617 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 38697558 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 38697557 TACTAACGAGGA 38697546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 41203069 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 41203010 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 41203009 ATACTAACGAGGA 41202997 >seq255 Length=264719 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| | ||| |||| ||| ||| || || || ||||| || | || || | | Sbjct 227505 CGCAGCCCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCA 227564 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || | || || || |||||||| || | | | | || |||||| Sbjct 227565 TCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTG 227624 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| |||||| ||||| || | ||||| || | || || | || |||||| Sbjct 227625 TCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATG 227684 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| |||||||||||||| Sbjct 227685 GTCTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 227719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571725787536600