Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq69 87.8 3e-12 seq21 86.0 9e-12 seq13 86.0 9e-12 >seq69 Length=11345371 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC--TTTAGATATATTATAATCTG 146108 ||||||| |||||| || || | ||| | ||| || || ||| ||| | | || || | Sbjct 5552186 CCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGT--TGTAGTCAG 5552129 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | |||||| ||||||||||||||||| || ||||| || Sbjct 5552128 ACAAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTT 5552069 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||||||||| || Sbjct 5552068 GAATTCCTTCTTTATCCTG 5552050 >seq21 Length=29177037 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | ||| || || || || || || || || Sbjct 16234638 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 16234697 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | |||||| |||||||| |||||||| || ||||| || ||| Sbjct 16234698 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 16234757 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 16234758 ATTCCTTCCTTATCCTG 16234774 >seq13 Length=31987310 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | ||| || || || || || || || || Sbjct 25852491 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 25852550 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | |||||| |||||||| |||||||| || ||||| || ||| Sbjct 25852551 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 25852610 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 25852611 ATTCCTTCCTTATCCTG 25852627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743407017542400