Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1111 100 2e-16 seq121 89.7 3e-13 seq46 89.7 3e-13 >seq1111 Length=9394 Score = 100 bits (110), Expect = 2e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 34168 GCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTG 34227 ||| || | |||| |||| || | || |||||||| ||||||||||| || || Sbjct 97 GCGGAGGCGCAGCGCCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGT 156 Query 34228 ACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGC 34286 ||| | || |||| ||| ||||| || ||||| || ||||||||| || |||| | || Sbjct 157 GCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGG-ATGC 215 Query 34287 TCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCC 34345 |||||||| || ||| ||||| | || | || | || | | || || || Sbjct 216 CTTCCTTGTCCTGGAT-TTTGGCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCG 274 Query 34346 ACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | |||||||| ||||| || || || |||||||||||||||||| || Sbjct 275 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 322 >seq121 Length=4665274 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||| ||| | ||| ||||||||| ||||||||||| ||| Sbjct 2221383 CCACCCCTCAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 2221442 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || |||| ||||||||| ||| Sbjct 2221443 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 2221502 Query 34283 ACGCTCTCCTTGTC 34296 | ||||||||| || Sbjct 2221503 ATGCTCTCCTTATC 2221516 >seq46 Length=16750451 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||| ||| | ||| ||| ||||| ||||||||||||||| Sbjct 1815919 CCACCCCTCAGGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1815860 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || |||| |||||||||| ||| Sbjct 1815859 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGG 1815800 Query 34283 ACGCTCTCCTTGTC 34296 | || |||||| || Sbjct 1815799 ATGCCCTCCTTATC 1815786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323021423583200