Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq61 224 9e-54 seq37 95.1 1e-14 >seq61 Length=12918418 Score = 224 bits (248), Expect = 9e-54 Identities = 337/476 (71%), Gaps = 7/476 (1%) Strand=Plus/Plus Query 15906 AAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCT 15965 |||| | ||||||| || | | ||||| ||| ||| | ||||| || || ||||||| Sbjct 2373293 AAAAAAAATTATCTGTTGGACTGGACATCACTCCCATCCTCTGATACTCTCTTACTCTCT 2373352 Query 15966 TTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | |||||||| || || || ||||| | ||| ||||| ||||| || ||||| ||||||| Sbjct 2373353 TCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATTTT 2373412 Query 16026 TTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTA 16085 | | | || | | || | |||| || | ||| || | ||||||||| | Sbjct 2373413 CTACTCTGAAAACCTTGCTGAAACCTAGCTCCAGCATAAGTCTGTCAGGCACAAATTCAA 2373472 Query 16086 TATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTA 16145 |||||||||||||||| |||||||| || || | || ||||| | || || || | Sbjct 2373473 TATACTGTTTCATTAACATGCAGTTCATCCCAATGAGATTCACAGGCAAGGCCTCAGTAA 2373532 Query 16146 AAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACG 16205 || | | |||||| ||||| || | |||||| ||| | ||| || | || Sbjct 2373533 GGAACTCCTGTTCTATTTTAACAGCACTGAGGATTATTTCTTTCACT---CTCTGCTCCG 2373589 Query 16206 GAGG---GTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGT 16262 ||| || || || ||||| ||||| | |||||||| ||||| || || || || | Sbjct 2373590 AAGGTTTGTGTATTAGATGTTTGAACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCAT 2373649 Query 16263 CCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT-CGTTTTTTAATC 16321 |||| || || | || || |||||||| || || ||||| |||||| | |||||| | | Sbjct 2373650 CCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGC 2373709 Query 16322 CAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGC 16377 || ||||| | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 2373710 CAGAATATCGATGCAAACGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCAAAAGC 2373765 >seq37 Length=21270769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || ||||| || || | || || |||||||| || || ||||| ||||||| |||||| Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| || ||||||||||| || ||||| ||||| || || || Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGCC 14837934 Query 16379 AC 16380 || Sbjct 14837935 AC 14837936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462437737917000