Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq7 1359 0.0 seq61 98.7 7e-16 >seq7 Length=46948058 Score = 1359 bits (1506), Expect = 0.0 Identities = 1147/1406 (82%), Gaps = 20/1406 (1%) Strand=Plus/Plus Query 107230 TTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC---CTCCTCCACCTTGCCTGTG 107286 ||||||||| |||| ||||||||| | ||||| | | ||||||| ||| | | Sbjct 3593624 TTTGTAATTGAAGGTGTTTTGTTCTATTCAAGGTTTCCACCCTCCTCCTCCTATTCCAAG 3593683 Query 107287 CCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCC 107346 |||||||| | ||||||||||| | |||||||||| || | |||| Sbjct 3593684 GCCAAACTCACT------------CCATGAAGATGATTTGGTGGAAGAA--AG-TCTGCC 3593728 Query 107347 GGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGAC 107406 || ||| |||||||||||||| |||||||| ||||||||||| ||||| |||| | || Sbjct 3593729 GGCAGCATTATCTGTGGGCCCTGTGCTGCTATGTGCTGCTGGCCATTGTTGCTCTAAAAC 3593788 Query 107407 TTTCCCTCAGGTTTAAATGTGA-TGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAG 107465 | | || |||| |||||||| | ||| |||| |||| ||||| |||| | ||| || Sbjct 3593789 TCACTCTACGGTTGAAATGTGACTTTAG-TTCCCTGGACCTGGACTCCACAGGCTTTCAA 3593847 Query 107466 AGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATC 107525 || | | |||||||||||| |||||||| |||||| ||||||||| ||||||| || Sbjct 3593848 AGCCGGTACTGTAGGGACAGCTTGTACAACTCCCTGAAACTGCCAGCACAGAGATCTATT 3593907 Query 107526 AACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAAC 107585 ||||||||| | |||| | ||||||||||||||||||| || | || || || ||||| Sbjct 3593908 AACTGTTCTAGAATCATCCAAGGGGACCAGGAAGCAGTGATCGAAGCTCTTCTGAACAAC 3593967 Query 107586 CTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGA 107645 |||| ||||||||| ||| |||||| || | ||| ||||||||||||| |||| | Sbjct 3593968 CTGGCGATGAAGAAAACACGGGTGCCTCTTACAGACACTGATTACCTCAACATGACCAAA 3594027 Query 107646 GACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAG 107705 || ||| ||| || |||||| | ||||||||| | |||| ||| |||| ||||||||| Sbjct 3594028 GATTGTAAGCAATTTAAGGCCAACAGGAAGTTCTTGGAGTTTCCATTGAGCAAAGAAGAG 3594087 Query 107706 CTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGG 107765 ||||||| || ||||| || || || ||| |||||||||||||||| ||||||||| || Sbjct 3594088 TTAGACTTTCCTATTGCATATTCTATAGTGATCCATGAGAAGATTGAGAACTTTGAAAGG 3594147 Query 107766 CTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCC 107825 |||||| |||| ||||||| ||| ||||||||||||||||| |||||||||| |||||| Sbjct 3594148 CTGCTGAGAGCTGTGTATGTCCCGCAGAACATATACTGTGTGCACGTGGATGAGAAGTCA 3594207 Query 107826 CCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATG 107885 ||||| || | |||| |||| ||||| || |||||||| |||||||||||||||||| || Sbjct 3594208 CCAGAAACCTACAAACAGGCAGTCAAAGCAATTATTTCTTGCTTCCCCAATGTCTTCTTG 3594267 Query 107886 GCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAAC 107945 |||||||||||||| | |||||||||||||||||||||||| || || ||||| ||||| Sbjct 3594268 GCCAGTAAGTTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTACAGGCTGATTTGAAC 3594327 Query 107946 TGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGG 108005 |||||||||||| |||| ||||| ||||||||||||||||||| ||||| || |||||| Sbjct 3594328 TGTATGGAAGACCTGCTGCAGAGTCCAGTGCCATGGAAGTACTTCCTGAACACTTGCGGG 3594387 Query 108006 ACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGT 108065 |||||||| || ||||||||||| || |||||||||||||||||||||||| |||| || Sbjct 3594388 ACAGACTTTCCTATAAAGACCAACGCAGAGATGGTCCTGGCCCTCAAGATGCTGAAAGGG 3594447 Query 108066 AAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGC 108125 |||||||| |||||||| || ||||| ||||| ||||||||| ||||||||||| | | Sbjct 3594448 AAGAACAGCATGGAGTCAGAATTACCTAGTGAGTACAAAAAAAACCGCTGGAAATATCAC 3594507 Query 108126 TATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAAT 108185 | |||||||||||||| || ||| |||| ||||||||||||||| |||||||| ||| Sbjct 3594508 TTTGAGGTGACAGACAGCTTGCACCAAACCAACAAGATGAAGGACCCACCCCCTGAAAAT 3594567 Query 108186 TTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTC 108245 || |||||||||||||||||||||||| | ||||| ||||| |||||||||||||| ||| Sbjct 3594568 TTGCCCATGTTCACAGGGAATGCCTATATGGTGGCTTCTCGCGCCTTTGTCCAACAAGTC 3594627 Query 108246 TTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGAC 108305 ||||| |||||||| |||| |||||| |||||||||| |||||||| || ||||| || Sbjct 3594628 TTAGAGAACCCTAAGTCCCGAAGACTAATTGAATGGGTAAAAGACACATACAGCCCTGAT 3594687 Query 108306 GAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCAC 108365 |||||||||||||| || |||||||| || || |||||||||||||| || || |||| Sbjct 3594688 GAACACCTCTGGGCTACTCTTCAGCGCGCACCCTGGATGCCTGGCTCCGTCCCCTACCAC 3594747 Query 108366 CCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCAC 108425 |||||| |||||||||||||||| ||||||| ||| |||| || ||||||||| ||| Sbjct 3594748 TCCAAGTTTCACATCTCAGACATGGCTGCCATTGCCCGGCTGGTTAAGTGGCAGGGCCAT 3594807 Query 108426 GAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCC 108485 || || | ||||||||||||| ||||||| ||| |||||||||||||||| | | | | Sbjct 3594808 GAAGGCAACATCAGCATGGGGGCACCTTATGAACCTTGCTCTGGAATCCATCAGCGTGGC 3594867 Query 108486 ATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCA 108545 || || ||||| |||| ||||||||| ||||||| ||||||||||||||||| || || Sbjct 3594868 ATTTGTATTTATGGGGTTGGGGACCTGCACTGGATGCTCCAGAACCATCACCTGTTCGCC 3594927 Query 108546 AACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGT 108605 |||||||||||||| | |||||| |||| | || ||||| |||||||||||| |||| Sbjct 3594928 AACAAGTTTGACCCAAATGTGGATAATAATGCTCTTCAGTGTTTAGAAGAGTACTTACGA 3594987 Query 108606 CATAAGGCCATCTATGGGACTGAACT 108631 ||||||||||| || | ||||| || Sbjct 3594988 CATAAGGCCATATACAGAACTGATCT 3595013 >seq61 Length=12918418 Score = 98.7 bits (108), Expect = 7e-16 Identities = 231/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| || |||||||| ||||| || || | ||||||||||| ||||||| | | Sbjct 5050018 GAGTGGGCGAAGGACACCTACAGCCCTGATGAGTATCTCTGGGCCACGATTCAGCG-GAT 5050076 Query 108336 CCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | | || ||||| | |||| |||||| ||||| |||| || |||||| Sbjct 5050077 CCCTGAAGTCCCAGGCTCCATGTCCTTAAGCCAC---AAGTACGACATGTCTGACATGCT 5050133 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||||| | ||| | ||||||||||||||| || || || || ||| ||||| Sbjct 5050134 TGCCAGTGTGAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACACTGCCAAGGGCGCGCC 5050193 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | |||||| || |||||| | | || | ||| | | || ||||| || | Sbjct 5050194 CTACCCCCCCTGCAGCGGGGTCCATCTGCGCTCCGTGTGCGTGTTTGGAGCCGGTGATTT 5050253 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | | ||||| || | || ||| | || || || || |||||| | ||||| Sbjct 5050254 GAAGTGGATGCTGGGCACGCACCACTTATTTGCCAATAAATTTGACACTGATGTGGACCT 5050313 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCC 108614 | | | | |||||| | || ||| |||| || ||||| ||| Sbjct 5050314 TTTTGCCATCCAGTGCCTGGATGAGCACCTGCGGCATAAAGCC 5050356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348214279063530