Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1111 100 2e-16 seq255 96.9 3e-15 seq46 93.3 3e-14 seq49 89.7 4e-13 >seq1111 Length=9394 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| ||| ||||| ||||||||||| || ||| | || ||||| ||| Sbjct 116 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGT 175 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| |||| ||||| || || | || ||||||||| ||||| Sbjct 176 TTGCCCGCAAAAATCAGAGGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATTTTG 235 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || | | | | | |||| | ||| ||||| | ||| || |||||||||||| Sbjct 236 GCTTTGATATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCCGTC 295 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 296 AGGGTCTTCACAAAGATCTGCAT 318 >seq255 Length=264719 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| |||||| ||| ||| ||||| ||||||||||| || | | | || |||| Sbjct 227512 CCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTGTGGCCATCCTCCA 227571 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| || | || |||| ||||| || || || | | || ||||||||| | Sbjct 227572 GCTGTTTGCCCACAAAAATCAGACGCTGCTGATCCGGCAGGATGCCTTCCTTGTCCTGGA 227631 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | |||| | |||| |||| | ||| || ||||||| Sbjct 227632 TTTTAGCTTTGACATTCTCAGTGGTGTCACTGGCCTCTACCTTGAGGGTGATGGTCTTGC 227691 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| |||||||||||||||||||| Sbjct 227692 CCGTCAGGGTCTTCACAAAGATTTGCAT 227719 >seq46 Length=16750451 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | ||||||||||| ||| |||||||| |||||||||||| | Sbjct 1815919 CCACCCCTCAGGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1815860 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||| || || ||||| || |||| || ||| |||||||| || Sbjct 1815859 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGG 1815800 Query 45230 ACACCCTCCTTGTC 45243 | |||||||| || Sbjct 1815799 ATGCCCTCCTTATC 1815786 >seq49 Length=15761451 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||||| || ||| | || ||| Sbjct 14388153 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGAGGGTGCGGCCATCTTCC 14388212 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| ||| |||||||| || | | |||||||||| Sbjct 14388213 AGCTGTTTGCCAGCAAACATCAGATGCTACTGGTCGGGCGGGATGCACTCCTTGTCCTGG 14388272 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | |||| ||| | ||| || |||| | Sbjct 14388273 ATTTTGGCTTTGACAGTCTCAGTGGTGTCACTGGTCTCCCCCTGGAGGGTGATGGTCTCG 14388332 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||| |||||||||||||| ||||| Sbjct 14388333 CCCATCAAGGTCTTCACAAAGATCTGCAT 14388361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395013351594745