Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq61 253 2e-62 seq37 102 8e-17 >seq61 Length=12918418 Score = 253 bits (280), Expect = 2e-62 Identities = 473/688 (69%), Gaps = 9/688 (1%) Strand=Plus/Plus Query 13875 AAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTGATATTCACTAACTCTT 13933 |||||| |||||| | || | | || || || ||||| | ||||| || || ||||| Sbjct 2373293 AAAAAAAATTATC-TGTTGGACTGGACATCACTCCCATCCTCTGATACTCTCTTACTCTC 2373351 Query 13934 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 || |||||||||||||| || ||||||||||| ||||| ||||| || |||||||||||| Sbjct 2373352 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATTT 2373411 Query 13994 GTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCA 14053 | | || || || ||||||| || | | | ||| || | | || ||| Sbjct 2373412 TCTACTCTGAAAACCTTGCTGAAACCTAGCTCCAGCATAAGTCTGTCAGGCACAAATTCA 2373471 Query 14054 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 14113 ||||| || |||||| || ||||| || || || || ||||| | | || Sbjct 2373472 ATATACTGTTTCATTAACATGCAGTTCATCCCAATGAGATTCACAGGCAAGGCCTCAGTA 2373531 Query 14114 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAA 14173 | || || | |||||| ||||| | || || | | | | | ||| Sbjct 2373532 AGGAACTCCTGTTCTATTTTAACAGCACTGAGGATTATTTCTTTCACTCTCTGCTCCGAA 2373591 Query 14174 GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 14233 || | | |||||||||| || || | || ||||| ||||| || | |||||||| Sbjct 2373592 GGTTTGTGTATTAGATGTTTGAACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCATCC 2373651 Query 14234 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA-CCA 14292 || ||||||||||| || |||||||| | || ||||||| ||||| ||||||| | ||| Sbjct 2373652 CTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCA 2373711 Query 14293 AAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAA 14352 ||||| | || || || || |||||||| || || || ||||| ||||| || | | Sbjct 2373712 GAATATCGATGCAAACGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCAAAAGCCAGGAC 2373771 Query 14353 TCGTTCTCCAAACGATGCTTTTT-TGTTCGATATCCATTTTCTAG-CCCATTCAGAtttt 14410 |||||||| | || || | | ||| | || ||| | || |||| || | || Sbjct 2373772 ACGTTCTCCTAGGGAGCCTCTCTGTGTCCAATCCCCA----CAAGGCCCAGTCCGCCTTC 2373827 Query 14411 tttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTT 14470 || || | | || |||||||||||||||||| || | | |||| | |||| | | | Sbjct 2373828 TTCTTGACACAAGGCATTGTTTCAATAGCATTGAAGAGGTTTTCCCTTCCTTTGGCATCT 2373887 Query 14471 GAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATC 14530 | |||| |||||| | || | || ||||||||||||||| |||||||| | || | Sbjct 2373888 TTATTGTAAGTATCAGTGAGGAGACTGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTT 2373947 Query 14531 TGAAAACCATAAAAACATCTAGCTTCTG 14558 ||||| ||||| ||||| | ||||||| Sbjct 2373948 TGAAAGCCATAGAAACAGCGGGCTTCTG 2373975 >seq37 Length=21270769 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||| || ||||||||||| || |||||||| | || ||||||| ||||| ||||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||| || || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 14837933 CCACGACACGTTCTCC 14837948 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 14836202 GACATCACTCCCATCCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 14836261 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| ||||| || |||||||||||| Sbjct 14836262 TCCAGTGAGATATTCTCCATGAAGTCAAATGGATTT 14836297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| |||||||| || | || |||||||||||||||||||||||||| || || || Sbjct 14839890 AATGTAAGTATCAATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 14839949 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 14839950 GAAGCCATAGAAACAGCGGGCTTCTG 14839975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482268153384600