Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq119 104 2e-17 seq1111 96.9 3e-15 seq21 87.8 2e-12 seq13 87.8 2e-12 seq255 82.4 7e-11 >seq119 Length=4927305 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||| || |||||| ||||| ||||| | ||| || || || ||||| || || || || Sbjct 3051884 CACTTCATCTTTGCTGGTGTATTCTACTACTTCTGTGCACAGGTTGCTGCATTTGATGGT 3051825 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||| || ||||| |||||||| ||||| |||||||||||||| || || Sbjct 3051824 TCCCAAGTTCTGCTGATTACTTTTCCGATTGCAGGAATCTTTGTAGAGCATGTAGGGGGT 3051765 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||||| || ||| || || ||||| || Sbjct 3051764 ACCCGTTTCTGTCTGAGATTCAATGATGGC 3051735 >seq1111 Length=9394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 318 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 259 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||||||||||||| | ||||| |||||| Sbjct 258 GACACCATTGAGAATATCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 199 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||| ||| || || || ||||||||| |||| || || | || || ||| Sbjct 198 CAGCCTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 139 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 || || ||||| || || || ||||||| Sbjct 138 ATCCAGAAAGAGTCCACCCTGCATCTGG 111 >seq21 Length=29177037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || ||||| |||| || ||||| Sbjct 16234867 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 16234808 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| ||||| | || ||| |||||||| | || || || Sbjct 16234807 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 16234748 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || ||| | | || || ||||| ||||| | ||||| | | | ||| || || || Sbjct 16234747 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGA-TGGACGTACTTTGTCTGACTA 16234689 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| || || ||||||||||| || | ||||| |||| ||| Sbjct 16234688 CAACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGGT 16234637 >seq13 Length=31987310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || ||||| |||| || ||||| Sbjct 25852720 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACTATCACTCTCGAGGTCGAACCC 25852661 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| ||||| | || ||| |||||||| | || || || Sbjct 25852660 TCGGATACGATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGAT 25852601 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || ||| | | || || ||||| ||||| | ||||| | | | ||| || || || Sbjct 25852600 CAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGA-TGGACGTACTTTGTCTGACTA 25852542 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| || || ||||||||||| || | ||||| |||| ||| Sbjct 25852541 CAACATCCAAAAGGAGTCCACTCTTCATCTCGTTTTGAGACTTCGGGGTGGT 25852490 >seq255 Length=264719 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| || |||||| || | || || | Sbjct 227719 ATGCAAATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCAAGGTAGAGGCCAGT 227660 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| || | |||||| | ||| ||||||||||||| | | ||| || ||| Sbjct 227659 GACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGCATCCTGCCGGATCAG 227600 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || | ||||||||| |||| || Sbjct 227599 CAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGA 227565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445694826632400