Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq61 269 3e-67 seq119 136 5e-27 seq7 116 5e-21 seq28 98.7 1e-15 seq37 93.3 5e-14 >seq61 Length=12918418 Score = 269 bits (298), Expect = 3e-67 Identities = 631/942 (67%), Gaps = 25/942 (3%) Strand=Plus/Plus Query 33230 GTTTCTTTAAAAGTCAACATCTAAAG----AAAAATGATTGTCTTCTTGA---GACATAA 33282 ||||||||| ||||| |||| || | ||||| ||| ||| | || ||||| | Sbjct 2373263 GTTTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCA 2373322 Query 33283 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33342 ||||||| | || || || | || | || || || || ||||| || ||||||| || Sbjct 2373323 CTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 2373382 Query 33343 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATT 33402 | ||||| |||||||| ||||| ||||| || || ||| || | || || | | Sbjct 2373383 AGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCT 2373442 Query 33403 CAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTC 33462 | || | ||| || | || ||||| ||||| |||||| | || ||||| | Sbjct 2373443 CCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCC 2373502 Query 33463 CTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTG 33522 | ||||| || || || | ||| ||||||| || || ||||| || || ||| | Sbjct 2373503 CAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCACTGA 2373562 Query 33523 TTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAAC 33582 || || | | || | | || ||| |||| || |||||| ||||||| | Sbjct 2373563 GGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGGC 2373622 Query 33583 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTC 33642 | || || || ||||| | |||||| || || ||||| | ||| || ||||| ||||| | Sbjct 2373623 AAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGC 2373682 Query 33643 CGGGCATTAGGCCACGCTTTTTA-AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 | ||||| || || | ||||| ||||| ||||| || || || || || ||||||||| Sbjct 2373683 CAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAAG 2373742 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || ||||| ||||| ||||| || | | | ||||| || || || || ||| || Sbjct 2373743 ATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGC-CTCTC-TGTGTC 2373799 Query 33762 CACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 || | | ||||| || |||||||| || ||||||||||| ||||| || ||||| Sbjct 2373800 CAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATT 2373859 Query 33818 AAAGAGATAGtttt---tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||||| ||||| || | || ||||||| |||||||| | | ||||| || Sbjct 2373860 GAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGTA 2373916 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||||| || || ||||||| |||| | ||||| || |||||||| | || || || Sbjct 2373917 CATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTGT 2373976 Query 33935 AATCTGCACTTCTGTACAAAA---TCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 ||||| |||||| | ||| | | || | | || ||| | || || || || Sbjct 2373977 GATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-GG 2374035 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 34051 ||| || || || |||| | || | | || || | ||||| || | || | Sbjct 2374036 GGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGTC 2374095 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 || | | ||| || || || | ||||||| || | ||||| || || ||||| || Sbjct 2374096 CCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGGC 2374155 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||| | ||||| | |||||| || || || | || ||||| Sbjct 2374156 CTTCCTGTACATCTGCCAGATATCGTGGTACTCGACGGGGAA 2374197 >seq119 Length=4927305 Score = 136 bits (150), Expect = 5e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 3059027 ACCTGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATG 3058968 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| ||||| | | ||| Sbjct 3058967 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAA 3058908 Query 62508 CTATTTCTAAGACCGTAT 62525 || ||||||| ||| ||| Sbjct 3058907 CTGTTTCTAATACCATAT 3058890 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| ||| |||||||||||||| | || || | || || || ||||| || | Sbjct 3027861 CACTGAATACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACTGCAATCCTTGCGGCCAGGA 3027802 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | ||||| || || || | || || | || || ||| | ||||| |||| ||| || | Sbjct 3027801 TAGCATAGTCAGGGTGCTTGGTGGTCAAGGTCGCAGCTGTCTCGGCAGCCAAAGTATCTA 3027742 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| |||||| |||||| || || ||||| Sbjct 3027741 GTTCCACAGTGGTGACCCCACTATATAATCCTTGGATTACTTTCAT 3027696 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| ||| | || |||||| ||| | | | ||| ||||| || || || Sbjct 3038473 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCTCCAGCAGACTTG 3038414 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 || || | ||| ||| ||||||| |||||||| |||||||| ||||||||||| |||| Sbjct 3038413 GAAATCAGTGCACATTGTTTTAAAGTGTCATAAATGCCTTCAATGCTATCATCTTTCATA 3038354 Query 63627 TTAAGTAGAAAACAGCTA 63644 | || || ||||||||| Sbjct 3038353 CTGAGAAGGAAACAGCTA 3038336 >seq7 Length=46948058 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||| ||||||||| ||| ||| | ||||| || || ||||||||||||| ||| Sbjct 9108005 GTTACTGTCTATGATGTATATATTGTTCTTCAAGCCTTTATTCTGACTACTGCAGTATTT 9107946 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||||| ||| ||| |||| || |||||||||||||||||||||| | |||| Sbjct 9107945 CTTGGTCTGACTGCATACACTTTACAGTCTAAGAGAGATTTCAGTAAACTTGGAGCAGG 9107887 Score = 109 bits (120), Expect = 7e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 188348 AGTCCTGTTCTAATATTGGCATCAATGTTCGGATCTATAGGCTTGATTTTCGCATTGACT 188407 ||||||| | ||||||||| | || ||||| | ||||||||||||||||||||| Sbjct 9115560 AGTCCTGCTTTAATATTGGTGTTTGCCTTTGGATCCTTGGGCTTGATTTTCGCATTGACT 9115501 Query 188408 TTACACAGACATAAACATCCCCTGAATCTGTACCTACTTTGTGGATTT 188455 ||| |||||||||| |||||||| || |||||||| ||||| |||||| Sbjct 9115500 TTAAACAGACATAAGCATCCCCTTAACCTGTACCTGCTTTGCGGATTT 9115453 Score = 100 bits (110), Expect = 4e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||| Sbjct 9127037 TGCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTCCGTGGCCTCTGCCAGCGTGCAC 9126978 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 9126977 ATCCGAATGG 9126968 Score = 82.4 bits (90), Expect = 1e-10 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299 |||||| |||||||||| ||| | |||||| ||| || ||| | |||| || ||||| Sbjct 9117227 GCATTTATAAGAAAAGTGTACAGCATCCTTTCTCTGCAGCTTCTTCTAACTACAGCAACG 9117168 Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAG 188349 ||||| |||||||||||||||| | | | ||||||||||| | ||| Sbjct 9117167 TCTGCATTATTTTTATACTTTGACTCTGTGCATACATTTATACAGGAGAG 9117118 >seq28 Length=26224161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 21882816 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCTTT 21882757 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 |||||||| || | ||| || ||||| || ||||| |||||||| || ||||||||||| Sbjct 21882756 AGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGC 21882698 >seq37 Length=21270769 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||||| | ||| || ||||| ||||| || ||||| || || | |||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||| ||||| ||||| || || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 33724 C 33724 | Sbjct 14837933 C 14837933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629716474911600