Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq61 242 3e-59 seq28 114 1e-20 seq119 111 1e-19 seq37 102 8e-17 >seq61 Length=12918418 Score = 242 bits (268), Expect = 3e-59 Identities = 457/663 (69%), Gaps = 18/663 (3%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| || || |||| || | || || || |||||||| ||||| | Sbjct 2373321 CACTCCCATCCTCTGATACTCTCTTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCA 2373379 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||| ||| ||| ||||| | ||| |||| || || |||||| Sbjct 2373380 GTGAGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTA 2373439 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| || | || ||||| |||||||| |||||| || |||| Sbjct 2373440 GCTCCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCA 2373499 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || |||| ||| || | || | || | ||||||| |||||| ||||| ||| Sbjct 2373500 TCCCAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCAC 2373559 Query 11568 CAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | |||||| | || || | || || ||| |||| || |||||| ||||| Sbjct 2373560 TGAGGATTATTT-CTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATC 2373618 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| ||||| || ||||| || || || || || |||||||| |||||||| Sbjct 2373619 AGGCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTG 2373678 Query 11687 AATCCGGGCATCAATCCTCGttttttt-ATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | || ||||||| ||||| ||||||| | ||| ||||| | ||||| || |||||||| Sbjct 2373679 AGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAA 2373738 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||| || || ||||| || ||||| || | || | |||||| || | || Sbjct 2373739 GAAGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC---TAGGGAGCCTCTCTG 2373795 Query 11806 TATCCATTTTC----TGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 | |||| | | |||||| || || ||||| || || || ||||||||| |||| Sbjct 2373796 TGTCCAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAG 2373855 Query 11862 CGTTAAATAAATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | || || | | ||| || || | |||| | || ||||| | | | || Sbjct 2373856 CATTGAAGA---GGTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGAC 2373912 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 | |||||||| || || | |||||| | || ||||||| ||||||||||| || || | Sbjct 2373913 TGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTT 2373972 Query 11979 CTG 11981 ||| Sbjct 2373973 CTG 2373975 >seq28 Length=26224161 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 21882818 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCT 21882759 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| |||||| ||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 21882758 TTAGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 21882699 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 21882698 CCACCACCCTTTCCCC 21882683 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| |||||||||| ||| || || || Sbjct 21854873 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAATGAACATTCTCGATGGC 21854814 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || || |||| | |||||| ||| Sbjct 21854813 AATTTGAAAGCCATAGAAACAGCGAGCTTCTGGAACCTGTACCTCC 21854768 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| |||||||||| ||| || || | Sbjct 21878815 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAATGAACATTCTCGATGAC 21878756 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || || |||| | |||||| ||| Sbjct 21878755 AATTTGAAAGCCATAGAAACAGCGAGCTTCTGGAACCTGTACCTCC 21878710 >seq119 Length=4927305 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| ||||||||||| | || || || ||||| ||||| ||||||||| Sbjct 3059027 ACCTGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATG 3058968 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| ||||| || || | Sbjct 3058967 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAA 3058908 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 3058907 CTGTTTCTAATACCAT 3058892 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| |||||| | ||||| || || || | | || Sbjct 3033757 GTACCAGCATTGAAGAGAGTCGGAGAGGCATGTGTAAACCACTTCTCAGAAAGAAGGTTG 3033698 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | |||||| || | |||||||||||| | | Sbjct 3033697 TATGTTTCAATGGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3033638 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||||||||||||||| Sbjct 3033637 ATATGTTGTGGTCTTTC 3033621 >seq37 Length=21270769 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || |||||||| |||||||| | || ||||||| ||||| |||||| Sbjct 14837815 TCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTTTC 14837874 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| || ||||||||||| || || ||||| || || || || Sbjct 14837875 AGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAGCC 14837934 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 14837935 ACGACACGTTCTCC 14837948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468449572486800