Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq61 260 2e-64 seq7 210 3e-49 seq119 141 1e-28 seq37 111 2e-19 seq28 102 1e-16 >seq61 Length=12918418 Score = 260 bits (288), Expect = 2e-64 Identities = 624/931 (67%), Gaps = 27/931 (3%) Strand=Plus/Plus Query 35806 GTTTCTTTAAAAATCAACATCTAGAG----AAAAATGATTGTCTTCTTGA---GACATAA 35858 ||||||||| || || |||| | | ||||| ||| ||| | || ||||| | Sbjct 2373263 GTTTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCA 2373322 Query 35859 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 35918 ||||||| | || || || | || | || || || || ||||| || ||||| | || Sbjct 2373323 CTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 2373382 Query 35919 ATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATT 35978 | ||||| |||||||| || |||||||| || | ||| || | || || | | Sbjct 2373383 AGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCT 2373442 Query 35979 CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTC 36038 | || | ||| || | |||||||| ||||| |||||| | || ||||| | Sbjct 2373443 CCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCC 2373502 Query 36039 CTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTG 36098 | || || || || || | ||| ||||||| || || ||||| || || || ||| Sbjct 2373503 CAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTG 2373561 Query 36099 TT-ATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 36157 || || | | ||| | | || ||| | | || |||||| ||||||| Sbjct 2373562 AGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGG 2373621 Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || || ||||| | |||||| || || ||||| | ||| |||||||| ||||| Sbjct 2373622 CAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGG 2373681 Query 36218 CCGGGCATTAGGCCACGCTTTTTA-AGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || || | ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 2373682 CCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAA 2373741 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| ||||||||||| || | | | ||||| || || || || ||| | Sbjct 2373742 GATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGC-CTCTC-TGTGT 2373798 Query 36337 CCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||| | | ||||| || |||||||| || |||||||||||||| || ||||||| Sbjct 2373799 CCAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCAT 2373858 Query 36393 TAAAGAGATAGtttt---tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||||| ||||| || | || ||||||| || |||||| | | ||||| | Sbjct 2373859 TGAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGT 2373915 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 ||||||| || || ||||||| |||| ||||||| || |||||||| | || || | Sbjct 2373916 ACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTG 2373975 Query 36510 TAATCTGTACTTCTGTACAAAA---TCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 | ||||| |||||| | ||| | | || | | || ||| | || || ||||| Sbjct 2373976 TGATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-G 2374034 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTAT 36626 ||| || || || |||| | || | | || || | |||| || | || | Sbjct 2374035 GGGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGT 2374094 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 || | | ||| || || || | ||||||| || | ||||| || || ||||| | Sbjct 2374095 CCCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGG 2374154 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATA 36717 |||| | ||||| | |||||| || || || Sbjct 2374155 CCTTCCTGTACATCTGCCAGATATCGTGGTA 2374185 >seq7 Length=46948058 Score = 210 bits (232), Expect = 3e-49 Identities = 169/204 (83%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 9229 ATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCA 9288 ||||||||||| | |||||||||| | |||||||||||||| |||||||||||||||| Sbjct 9105831 ATTTCTTATTAACTGCTTCCAAAAGTCGCAACAGATGCAAGAATAGATTGATGATATCCA 9105890 Query 9289 AGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGT 9348 |||||| ||||| || ||||||||||| |||||||| |||||| | || || ||||||| Sbjct 9105891 AGTAGAGGTTGATGGAAGCTAACACATACTCTTCAGGTGAGAGCCTGTGCATCAGTGAGT 9105950 Query 9349 GCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCT 9408 | ||||||||||| |||||||| ||||| | ||| || || | ||||| || ||||||| Sbjct 9105951 GTGTGTCATAGATGATGAATCCACAGAAAAGAAGAGCTCCGAGAGCAGCCACCACCAGCT 9106010 Query 9409 CCACTGTTTCACTTTGCACAAATA 9432 ||| ||| ||||| | | ||||| Sbjct 9106011 CCAGTGTCTCACTATTAAAAAATA 9106034 Score = 143 bits (158), Expect = 4e-29 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 ||||||||||||||||||||||||||||| || |||| ||| |||||||||||| ||||| Sbjct 9107887 CCTGCTCCAAGTTTACTGAAATCTCTCTTAGACTGTAAAGTGTATGCAGTCAGACCAAGA 9107946 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || || ||||| | ||| | || |||||||||| |||||| Sbjct 9107947 AATACTGCAGTAGTCAGAATAAAGGCTTGAAGAACAATATATACATCATAGACAGTAAC 9108005 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 9126968 CCATTCGGATGTGCACGCTGGCAGAGGCCACGGAGCTGCCGTAGTTGAAGTCATCCTCGA 9127027 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 |||||||||| | |||| || Sbjct 9127028 TGGAGGAGCAGGGGTAGCGG 9127047 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 |||||| ||||||||||| | || |||||||| |||||||||| ||||||||||||||| Sbjct 9115453 AAATCCGCAAAGCAGGTACAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAATGCGAA 9115512 Query 9692 AATCAAGCCTATAGATACGAACATTGATGCCAATATTAGAACAGGACT 9739 ||||||||| | ||| | || | ||||||||| | ||||||| Sbjct 9115513 AATCAAGCCCAAGGATCCAAAGGCAAACACCAATATTAAAGCAGGACT 9115560 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 9738 CTCCCTTGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTT 9797 ||| | ||||||| | | ||| |||||||||||||||||| ||||| ||||| || Sbjct 9117118 CTCTCCTGTATAAATGTATGCACAGAGTCAAAGTATAAAAATAATGCAGACGTTGCTGTA 9117177 Query 9798 GTTAAAAGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 |||| ||||| || ||| ||||||| | ||| |||||||||| |||||| Sbjct 9117178 GTTAGAAGAAGCTGCAGAGAAAGGATGCTGTACACTTTTCTTATAAATGC 9117227 >seq119 Length=4927305 Score = 141 bits (156), Expect = 1e-28 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 3059027 ACCTGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATG 3058968 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| ||||| | | ||| Sbjct 3058967 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAA 3058908 Query 65301 CTATTTCTAAGACCGTAT 65318 || ||||||| ||| ||| Sbjct 3058907 CTGTTTCTAATACCATAT 3058890 >seq37 Length=21270769 Score = 111 bits (122), Expect = 2e-19 Identities = 103/130 (79%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 36174 GTAGAC---CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 36230 |||||| |||| || || ||||| | ||| |||||||| ||||| || ||||| || | Sbjct 14837804 GTAGACTCACCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTC 14837863 Query 36231 CACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTG 36290 | | ||||| ||||| ||||| |||||||| || ||||||||||| || ||||| |||| Sbjct 14837864 CTCTTTTTTTCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTG 14837923 Query 36291 CCGCAAAGGC 36300 |||| || || Sbjct 14837924 CCGCGAAAGC 14837933 >seq28 Length=26224161 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 21882816 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCTTT 21882757 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 |||||||| || | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 21882756 AGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGC 21882698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658067122129800