Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq61 273 3e-68 seq119 132 7e-26 seq37 116 5e-21 >seq61 Length=12918418 Score = 273 bits (302), Expect = 3e-68 Identities = 634/943 (67%), Gaps = 27/943 (3%) Strand=Plus/Plus Query 49608 GTTTCTTTAAAAGTCAACATCTAGAG----AAAAATGATTATCTTCTTGA---GACATAA 49660 ||||||||| ||||| |||| | | ||||| ||||||| | || ||||| | Sbjct 2373263 GTTTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCA 2373322 Query 49661 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 49720 ||||||| | || || || | || | || || || || ||||| || ||||||| || Sbjct 2373323 CTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 2373382 Query 49721 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATT 49780 | ||||| |||||||| ||||| ||||| || | ||| || | || || | | Sbjct 2373383 AGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCT 2373442 Query 49781 CAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTC 49840 | || | ||| || | |||||||| ||||| |||||| | || ||||| | Sbjct 2373443 CCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCC 2373502 Query 49841 CTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTG 49900 | || || || || || | ||| ||||||| || || ||||| || || ||| ||| Sbjct 2373503 CAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTG 2373561 Query 49901 TT-ATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 49959 || || | | || | | || ||| || | || |||||| ||||||| Sbjct 2373562 AGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGG 2373621 Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || || ||||| | |||||| || || ||||| ||||| |||||||| ||||| Sbjct 2373622 CAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGG 2373681 Query 50020 CCGGGCATTAGGCCACGCTTTTTA-AGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || || | ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 2373682 CCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAA 2373741 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 ||| ||||| ||||| ||||| || | | | ||||| || || || || ||| | Sbjct 2373742 GATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGC-CTCTC-TGTGT 2373798 Query 50139 CCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||| | | ||||| || |||||||| || ||||||||||| ||||| || |||| Sbjct 2373799 CCAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCAT 2373858 Query 50195 TAAAGAGATAGtttt---tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | ||||| ||||| || | || ||||||| |||||||| | | ||||| | Sbjct 2373859 TGAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGT 2373915 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 ||||||| || || ||||||| |||| | ||||| || |||||||| | || || | Sbjct 2373916 ACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTG 2373975 Query 50312 TAATCTGCACTTCTGTACAAAA---TCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | ||||| |||||| | ||| | | || | | || ||| | || || ||||| Sbjct 2373976 TGATCTGAACTTCTTGGCTAAACCTTAGCTCGACCAGGTTCTCAGTGACGATGCCGTC-G 2374034 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 ||| || || || |||| | || | | || | | |||| ||| | || | Sbjct 2374035 GGGCGGCGAAGAAAGCCAGGATGTGCGATGTGAAGTACCTCTCGTCGGGCTTGAGGGCGT 2374094 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 || | | ||| || || || | | ||||| || | ||||| || || ||||| | Sbjct 2374095 CCCGGTGCTGGATGTCCTTGGAAAGGCCCACTTCCTCGGCCGTCCAGAAGGACGCCTCGG 2374154 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 |||| | ||||| | |||||| || || || | || ||||| Sbjct 2374155 CCTTCCTGTACATCTGCCAGATATCGTGGTACTCGACGGGGAA 2374197 >seq119 Length=4927305 Score = 132 bits (146), Expect = 7e-26 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 3059027 ACCTGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATG 3058968 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| ||||| | | ||| Sbjct 3058967 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAA 3058908 Query 79180 CTATTTCTAAGACCGTAT 79197 || ||||||| ||| ||| Sbjct 3058907 CTGTTTCTAATACCATAT 3058890 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| |||||||||||||| | || || || || || || ||||| | | Sbjct 3027861 CACTGAATACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACTGCAATCCTTGCGGCCAGGA 3027802 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||| || || || | || || | || || ||| | ||||| |||| ||| || | Sbjct 3027801 TAGCATAGTCAGGGTGCTTGGTGGTCAAGGTCGCAGCTGTCTCGGCAGCCAAAGTATCTA 3027742 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||| || || || || ||| |||||| ||||||||| || ||||| Sbjct 3027741 GTTCCACAGTGGTGACCCCACTATATAATCCTTGGATTACTTTCAT 3027696 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994 || |||||| ||||| || ||||| ||||||||||| || | || || || | | | Sbjct 3046927 CTCTACTCGCTTCATGAAAAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCGAGCACG 3046868 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 3046867 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCA 3046808 Query 80055 CGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 || |||| ||| || || | |||| ||||| Sbjct 3046807 AGGCTCCAGGTAAATAGCAAATGCTCCAGGTCG 3046775 >seq37 Length=21270769 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| ||||| |||||||| ||||| || ||||| || || | |||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || |||||||||||||| ||||| ||||| || || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 50102 CAAC 50105 | || Sbjct 14837933 CCAC 14837936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718153472965800