Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq61 262 4e-65 seq37 105 6e-18 >seq61 Length=12918418 Score = 262 bits (290), Expect = 4e-65 Identities = 474/686 (69%), Gaps = 9/686 (1%) Strand=Plus/Plus Query 13543 AAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTGATATTCACTAACTCTT 13601 |||||| |||||| | || | | || || || ||||| | ||||| || || ||||| Sbjct 2373293 AAAAAAAATTATC-TGTTGGACTGGACATCACTCCCATCCTCTGATACTCTCTTACTCTC 2373351 Query 13602 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || |||||||||||||| || ||||||||||| ||||| ||||| || |||||||||||| Sbjct 2373352 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATTT 2373411 Query 13662 ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCA 13721 | | || || || ||||||| || | | | ||| |||| | ||| ||| Sbjct 2373412 TCTACTCTGAAAACCTTGCTGAAACCTAGCTCCAGCATAAGTCTGTCAGGCACAAATTCA 2373471 Query 13722 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 13781 ||||| || |||||| || ||||| || || || || ||||| | | || Sbjct 2373472 ATATACTGTTTCATTAACATGCAGTTCATCCCAATGAGATTCACAGGCAAGGCCTCAGTA 2373531 Query 13782 AAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAA 13841 | || || | |||||| ||||| || || | | | ||| | ||| Sbjct 2373532 AGGAACTCCTGTTCTATTTTAACAGCACTGAGGATTATTTCTTTCACTCTCTGCTCCGAA 2373591 Query 13842 GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 13901 || | | |||||||||| || || | || ||||| ||||| || | |||||||| Sbjct 2373592 GGTTTGTGTATTAGATGTTTGAACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCATCC 2373651 Query 13902 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt-AACCA 13960 || ||||||||||| || |||||||| | || ||||||| ||||| ||||||| | ||| Sbjct 2373652 CTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCA 2373711 Query 13961 AAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAA 14020 ||||| | ||||| || || |||||||| || || || ||||| ||||| || | | Sbjct 2373712 GAATATCGATGCAAACGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCAAAAGCCAGGAC 2373771 Query 14021 TCGTTCTCCAAACGATGCT-TTTTTGTTCGATATCCATTTTCTA-GCCCATTCAGAtttt 14078 |||||||| | || || | | ||| | || ||| | | ||||| || | || Sbjct 2373772 ACGTTCTCCTAGGGAGCCTCTCTGTGTCCAATCCCCA----CAAGGCCCAGTCCGCCTTC 2373827 Query 14079 tttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTT 14138 || || | | || |||||||||||||||||| || | | |||| | |||| | | | Sbjct 2373828 TTCTTGACACAAGGCATTGTTTCAATAGCATTGAAGAGGTTTTCCCTTCCTTTGGCATCT 2373887 Query 14139 GAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATC 14198 | |||| |||||| | || | || ||||||||||||||| |||||||| | || | Sbjct 2373888 TTATTGTAAGTATCAGTGAGGAGACTGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTT 2373947 Query 14199 TGAAAACCATAAAAGCATCTAGCTTC 14224 ||||| ||||| || || | ||||| Sbjct 2373948 TGAAAGCCATAGAAACAGCGGGCTTC 2373973 >seq37 Length=21270769 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || ||||||||||| || |||||||| | || ||||||| ||||| ||||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||| || || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 14837933 CCACGACACGTTCTCC 14837948 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 14836202 GACATCACTCCCATCCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 14836261 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| ||||| || |||||||||||| Sbjct 14836262 TCCAGTGAGATATTCTCCATGAAGTCAAATGGATTT 14836297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479650973673000