Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq61 250 2e-61 seq37 102 8e-17 >seq61 Length=12918418 Score = 250 bits (276), Expect = 2e-61 Identities = 472/687 (69%), Gaps = 7/687 (1%) Strand=Plus/Plus Query 13331 AAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTGATATTCACTAACTCTT 13389 |||||| |||||| | || | | || || || ||||| | ||||| || || ||||| Sbjct 2373293 AAAAAAAATTATC-TGTTGGACTGGACATCACTCCCATCCTCTGATACTCTCTTACTCTC 2373351 Query 13390 TTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || ||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||| Sbjct 2373352 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATTT 2373411 Query 13450 GTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCA 13509 | | || || || ||||||| || | | | ||| |||| | ||| ||| Sbjct 2373412 TCTACTCTGAAAACCTTGCTGAAACCTAGCTCCAGCATAAGTCTGTCAGGCACAAATTCA 2373471 Query 13510 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTT 13569 ||||| || |||||| || ||||| || || || || ||||| | | ||| Sbjct 2373472 ATATACTGTTTCATTAACATGCAGTTCATCCCAATGAGATTCACAGGCAAGGCCTCAGTA 2373531 Query 13570 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAA 13629 | || || | |||||| ||||| | || || || | | | | ||| Sbjct 2373532 AGGAACTCCTGTTCTATTTTAACAGCACTGAGGATTATTTCTTTCACTCTCTGCTCCGAA 2373591 Query 13630 GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 13689 || | | |||||||||| || || | || ||||| ||||| || | |||||||| Sbjct 2373592 GGTTTGTGTATTAGATGTTTGAACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCATCC 2373651 Query 13690 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt-AACCA 13748 || ||||||||||| || |||||||| | || ||||||| ||||| ||||||| | ||| Sbjct 2373652 CTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCA 2373711 Query 13749 AAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAG 13808 ||||| | || || || || |||||||| || || || ||||| ||||| || | | Sbjct 2373712 GAATATCGATGCAAACGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCAAAAGCCAGGAC 2373771 Query 13809 TCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTA-GCCCATTCAGAttttt 13867 |||||||| | || || | | ||| | |||| | | ||||| || | || | Sbjct 2373772 ACGTTCTCCTAGGGA-GCCTCTCTGTGTCCAATCC--CCACAAGGCCCAGTCCGCCTTCT 2373828 Query 13868 ttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTG 13927 | || | | || ||||||||| || |||||||| | | |||| | |||| | | | Sbjct 2373829 TCTTGACACAAGGCATTGTTTCAATAGCATTGAAGAGGTTTTCCCTTCCTTTGGCATCTT 2373888 Query 13928 AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 | |||| |||||| | || | || ||||||||||||||| ||||||| | || | | Sbjct 2373889 TATTGTAAGTATCAGTGAGGAGACTGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTTT 2373948 Query 13988 GAAAACCATAAAAACATCTAGCTTCTG 14014 |||| ||||| ||||| | ||||||| Sbjct 2373949 GAAAGCCATAGAAACAGCGGGCTTCTG 2373975 >seq37 Length=21270769 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| || ||||||||||| || |||||||| | || ||||||| ||||| ||||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||| || || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 14837933 CCACGACACGTTCTCC 14837948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 14836202 GACATCACTCCCATCCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 14836261 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| ||||| || || ||||||||| Sbjct 14836262 TCCAGTGAGATATTCTCCATGAAGTCAAATGGATTT 14836297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| |||||||| || | || ||||||||||||||||||||||| || || || || Sbjct 14839890 AATGTAAGTATCAATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 14839949 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 14839950 GAAGCCATAGAAACAGCGGGCTTCTG 14839975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478511956585800