Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq69 93.3 3e-14 seq134 84.2 2e-11 seq57 84.2 2e-11 >seq69 Length=11345371 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || || | ||| | |||| |||| |||| | ||||| || ||| Sbjct 5552186 CCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGAC 5552127 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || | || | | || || | |||||| || ||||||||||||| ||||||||||| | Sbjct 5552126 AAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGA 5552067 Query 43003 ACACCTTCTTTTTCGCTGATCAACT---CTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | |||||||| || ||| |||| | ||||| | | | ||| || | ||| Sbjct 5552066 ATTCCTTCTTTATC-CTG--GAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCG 5552010 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | || ||||| || || | || ||||||||||| || | ||| || Sbjct 5552009 ACCTCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACATCTT 5551957 >seq134 Length=4000202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| || || | ||| | |||| ||||||||| | | ||| || ||||| |||| Sbjct 2759343 AGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACAC 2759402 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || | |||||| || ||||| ||||||| ||||||||||| || | ||||| Sbjct 2759403 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCC 2759462 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| | ||||| | | | || || | ||||| | | || Sbjct 2759463 TTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTG 2759522 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 ||||| || || | || |||||||| ||||| ||||| || Sbjct 2759523 ATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 >seq57 Length=13814656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || || | ||| | |||| ||||||||| | |||| || ||| Sbjct 7965739 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGCTGTAGTCAGAC 7965680 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || || | |||||| || ||||| ||| ||| ||||||||||| || Sbjct 7965679 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCCATCTCTGTTGATCGGGTGGA 7965620 Query 43003 ACACCTTCTTTTTC 43016 | ||||| || || Sbjct 7965619 ATTCCTTCCTTATC 7965606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381309897185010