Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq61 262 5e-65 seq119 138 2e-27 seq37 120 4e-22 >seq61 Length=12918418 Score = 262 bits (290), Expect = 5e-65 Identities = 505/734 (69%), Gaps = 23/734 (3%) Strand=Plus/Plus Query 41713 GTTTCTTTAAAAGTCAACATCTAAAG----AAAAATGATTGTCTTCTTGA---GACATAA 41765 ||||||||| ||||| |||| || | ||||| ||| ||| | || ||||| | Sbjct 2373263 GTTTCTTTAGAAGTCTGCATCCAAGGTAAAAAAAAAAATTATCTGTTGGACTGGACATCA 2373322 Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825 ||||||| | || || || | || | || || || || |||||||| ||||||| || Sbjct 2373323 CTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 2373382 Query 41826 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATT 41885 | ||||| |||||||| ||||| ||||| || | ||| || | || || | | Sbjct 2373383 AGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTGAAACCTAGCT 2373442 Query 41886 CAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTC 41945 | || | ||| || | | ||||| ||||| |||||| | || ||||| | Sbjct 2373443 CCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACATGCAGTTCATCC 2373502 Query 41946 CTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTG 42005 | || || || || || | ||| ||||||| || || ||||| || || || ||| Sbjct 2373503 CAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTTAACAGCA-CTG 2373561 Query 42006 TT-ATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 42064 || || | | ||| | | || ||| | | || |||||| ||||||| Sbjct 2373562 AGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTTGAACATCAGG 2373621 Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || || ||||| | ||||||||| || ||||| | ||| |||||||| ||||| Sbjct 2373622 CAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGG 2373681 Query 42125 CCGGGCATTAGGCCACGCTTTTTA-AGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| || || | ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 2373682 CCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGCCAGAAAAGAA 2373741 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| ||||| ||||||||||| || | | | ||||| || || || || ||| | Sbjct 2373742 GATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGC-CTCTC-TGTGT 2373798 Query 42244 CCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||| | | ||||| || |||||||| || ||||||||||| ||||| || |||| Sbjct 2373799 CCAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCAT 2373858 Query 42300 TAAAGAGATAGtttt---tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||||| ||||| || | || ||||||| || ||||| | | ||||| | Sbjct 2373859 TGAAGAG---GTTTTCCCTTCCTTTGGCATCTTTATTGTAAGTATCAGTGAGGAGACTGT 2373915 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| || || ||||||| |||| | ||||| || |||||||| | ||| || | Sbjct 2373916 ACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAACAGCGGGCTTCTG 2373975 Query 42417 TAACCTGTACTTCT 42430 | | ||| |||||| Sbjct 2373976 TGATCTGAACTTCT 2373989 >seq119 Length=4927305 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 3059027 ACCTGAAATTCTCCTGATAATACTCTGCGAGTGTAAATGTTGCTCGTATAAGGTTCAATG 3058968 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| ||||||||||| ||||| ||||| ||||| | | | | Sbjct 3058967 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGTGCAATAAGCAAA 3058908 Query 71263 CTATTTCTAAGACCAT 71278 || ||||||| ||||| Sbjct 3058907 CTGTTTCTAATACCAT 3058892 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| |||||||||||||| | || || || || || || ||||| || | Sbjct 3027861 CACTGAATACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACTGCAATCCTTGCGGCCAGGA 3027802 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||| || || || | || || | || || ||| | || || |||| ||| || | Sbjct 3027801 TAGCATAGTCAGGGTGCTTGGTGGTCAAGGTCGCAGCTGTCTCGGCAGCCAAAGTATCTA 3027742 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| |||||| ||||||||| || ||||| Sbjct 3027741 GTTCCACAGTGGTGACCCCACTATATAATCCTTGGATTACTTTCAT 3027696 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || |||||||| || || | ||| || ||||| || || || || ||||||||| Sbjct 3053961 TAGGTTTCGTATGGACCAAGTTCCTTGGCAAGATCACAGCTGGCATCCAAGGCTCCATAA 3053902 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||| || || || |||| ||| || | || |||||||| || ||||| || || Sbjct 3053901 TAAATCGTCTCAAAGATCTGCTTGTTCAATAACTGGGCTTCCGGACTCTCAAAAGGGTAT 3053842 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | |||||||| || ||||| | ||||| || ||||| || ||||| | || | Sbjct 3053841 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGGCGT 3053782 Query 71563 TTATTAGA 71570 ||||| || Sbjct 3053781 TTATTGGA 3053774 >seq37 Length=21270769 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || ||||| | ||| |||||||| ||||| || ||||| || || | |||| Sbjct 14837813 CCTCATCCCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCTTTTTT 14837872 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || |||||||||||||| ||||| |||||||| || | Sbjct 14837873 TCAGCCAGAATATCGACGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCCGCGAAAG 14837932 Query 42207 C 42207 | Sbjct 14837933 C 14837933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671031440212200