Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 1e-14 seq13 95.1 1e-14 seq134 87.8 2e-12 seq16 82.4 8e-11 >seq21 Length=29177037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 |||||| | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 16234652 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCA-T 16234710 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||||||||||||| |||||| | || ||||| || || || ||||| || | Sbjct 16234711 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTAT 16234770 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || || | | ||| | ||| |||| |||||| || || | ||| | | Sbjct 16234771 CCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAG 16234830 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || | ||||| ||||| || ||||| Sbjct 16234831 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 16234864 >seq13 Length=31987310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 |||||| | ||||| || || || ||||| |||||||| || || || | || | | Sbjct 25852505 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGTCCA-T 25852563 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||||||||||||| |||||| | || ||||| || || || ||||| || | Sbjct 25852564 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTAT 25852623 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || || | | ||| | ||| |||| |||||| || || | ||| | | Sbjct 25852624 CCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGAGTGATAG 25852683 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || | ||||| ||||| || ||||| Sbjct 25852684 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 25852717 >seq134 Length=4000202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | ||||| || || || ||||| |||| ||| || || || | | || Sbjct 2759348 CAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAAGTACACCCATC 2759407 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||||||||||||| |||||| | || |||||||| || || ||||| || || Sbjct 2759408 TTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATC 2759467 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || || | | ||| | ||| |||| |||||| || | | ||| | || Sbjct 2759468 CTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTGAGAGTGATAGT 2759527 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || | | ||||| ||||| || ||||| Sbjct 2759528 CTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 2759560 >seq16 Length=30823778 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 |||||| | ||||| || | || ||||| ||||| || || || || | || | | Sbjct 1301368 CAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGACAAAGTACGTCCA-T 1301426 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||||||||||||| |||||| | || ||||| || || || ||||| || | Sbjct 1301427 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTAT 1301486 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || || | | ||| | ||| |||| ||||| || || | ||| | | Sbjct 1301487 CCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGAGTGATAG 1301546 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || | ||||| ||||| || ||||| Sbjct 1301547 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1301580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506932992500400