Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq21 100 2e-16 seq13 100 2e-16 seq134 95.1 9e-15 seq69 86.0 5e-12 seq5 84.2 2e-11 seq16 82.4 6e-11 >seq21 Length=29177037 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||| | |||||| ||||| || ||||| |||||||| || Sbjct 16234638 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 16234697 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | |||||| ||||| | ||||| | ||||| || |||| Sbjct 16234698 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 16234757 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 16234758 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 16234817 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || || || || ||||| || ||||| ||||| || Sbjct 16234818 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 16234867 >seq13 Length=31987310 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||| | |||||| ||||| || ||||| |||||||| || Sbjct 25852491 CCACCCCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 25852550 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | |||||| ||||| | ||||| | ||||| || |||| Sbjct 25852551 AAAGTACGTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGA 25852610 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 25852611 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACC 25852670 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || || || || ||||| || ||||| ||||| || Sbjct 25852671 TCGAGAGTGATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 25852720 >seq134 Length=4000202 Score = 95.1 bits (104), Expect = 9e-15 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 15141 CTCTCAA-TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGA 15199 |||| || ||| ||||| | |||||| ||||| || ||||| |||| ||| || | | Sbjct 2759337 CTCTGAAGTCTCAAAACGAGATGAAGAGTGGACTCCTTTTGGATGTGGTAGTCTGACAAA 2759396 Query 15200 ATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATT 15259 | | | | ||||| | |||||| ||||| | ||||| | ||||| ||| ||||||| Sbjct 2759397 GTACACCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCGGGTGGAATT 2759456 Query 15260 CCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCT 15319 ||||| || || || ||| ||| ||| ||||||| ||||| ||| || | Sbjct 2759457 CCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTCGACCTTG 2759516 Query 15320 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || || || || || | || ||||| || ||||| ||||| || Sbjct 2759517 AGAGTGATAGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATCTT 2759563 >seq69 Length=11345371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | ||| ||||| | |||||| ||||| || |||| |||||||| || Sbjct 5552186 CCACCTCGAAGTCTCAAAACGAGATGAAGAGTGGACTCCCTTTGGATGTTGTAGTCAGAC 5552127 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | |||||| ||||| | ||||| | ||||| ||| | || Sbjct 5552126 AAAGCACATCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGTTGA 5552067 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || | ||| ||| ||| ||||||| ||||| ||| || Sbjct 5552066 ATTCCTTCTTTATCCTGGAACTTGGCCTTGACATTTTCTATTGTATCCGAGGGTTCGACC 5552007 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || || | || ||||| ||||| || | ||| || Sbjct 5552006 TCCAGAGTGATAGTCTTCCCCGAAAGGGTTTTCACAAACATCTACATCTT 5551957 >seq5 Length=50938590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCG--C 15194 ||||| | | ||| |||| | |||||| ||||| || ||||| |||| ||| || | Sbjct 5964033 CCACCCCAAAGTCTCAAAATGAGATGAAGAGTGGACTCCTTTTGGATGTAGTAGTCAGAC 5963974 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | || | ||||| | |||||| | ||| | ||||| | |||||| | | | Sbjct 5963973 TAAGCACG-TC-CATCTTCAACTTGTTTACGAGCAAAGATCAATCTTTGTTGATTGGGAG 5963916 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| || || || ||| ||| ||| ||||||| ||| | | ||| | Sbjct 5963915 GAATTCCTTCCTTTTCCTGGATCTTGGCCTTGACATTTTCTATTGTAACTGAAGGTTCCA 5963856 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | |||| ||||| || | || |||| |||||||| ||||| || Sbjct 5963855 CCTCGAGAGTAAAAGTTTTCCCCATAAGGATTTTCACAAAAATCTGCATCTT 5963804 >seq16 Length=30823778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| | |||||| ||| | || ||||| ||||| || || | | | | | Sbjct 1301366 CTCAAAACGAGATGAAGAGTGAACTCCTTTTGGATGTTATAGTCAGACAAAGTACGTCCA 1301425 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| ||||| | ||||| | ||||| || |||||||||||| || Sbjct 1301426 TCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCTTCCTTA 1301485 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || ||| ||| ||| ||||||| ||||| || || || | || || Sbjct 1301486 TCCTGGATCTTGGCCTTGACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGAGTGATA 1301545 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || || ||||| || ||||| ||||| || Sbjct 1301546 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 1301583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362122501412145