Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq61 187 2e-42 seq28 120 3e-22 >seq61 Length=12918418 Score = 187 bits (206), Expect = 2e-42 Identities = 457/686 (67%), Gaps = 25/686 (4%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| || ||| | ||||| || || ||||| || ||||| ||||| || || ||| Sbjct 2373316 GACATCACTCCCATCCTCTGATACTCTCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 2373375 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTT 12960 || | || ||||| ||||| || || || ||||||| || | || || | Sbjct 2373376 TCCAGTGAGATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACC----TTGCT 2373431 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | |||| || || | | |||||||| ||||| || || |||||||||||||| Sbjct 2373432 GAAACCTAGCTCCAGCATAAGTCTGTCAGGCACAAATTCAATATACTGTTTCATTAACAT 2373491 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 |||||||| || || | || ||||||| || || || | || | | |||||| | Sbjct 2373492 GCAGTTCATCCCAATGAGATTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCTATTTT 2373551 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 ||| || || | ||| ||| | | | | ||| | || | | |||||| || Sbjct 2373552 AACAGCACTGAGGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTATTAGATGTTT 2373611 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||||||| || ||||| |||||||| || || ||||| || || || || || || || Sbjct 2373612 GAACATCAGGCAAGCAAAGTCACAGTGGAAACCCTCATCCCTGCTAATAAGTTCATTGGA 2373671 Query 13201 AAATGTTAGACCCGGCATAAGCCCT-CGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 |||||| || || ||||| || ||| | |||||| | ||| ||||| | |||||||| | Sbjct 2373672 AAATGTGAGGCCAGGCATCAGTCCTCCTTTTTTTCAGCCAGAATATCGATGCAAACGAGC 2373731 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 | ||||| || || ||||| ||||| ||||| || | | | ||| || || | | | Sbjct 2373732 CAGAAAAGAAGATCCCTTCCACTGCCGCAAAAGCCAGGACACGTTCTCC-TAGGGAGCCT 2373790 Query 13320 TTTTACTCTCTATCCACTTTC----TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 |||| | |||| | | |||||||| || || | || || || ||| Sbjct 2373791 -----CTCTGTGTCCAATCCCCACAAGGCCCAGTCCGCCTTCTTCTTGACACAAGGCATT 2373845 Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG---TCTAAAATATAAGTATCT 13432 |||| || || || || | | || |||||| || ||| | | |||||||| Sbjct 2373846 GTTTCAATAGCATTGAAGAGGT-TTTCCCTTCCTT--TGGCATCTTTATTGTAAGTATCA 2373902 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 | | | || |||||||| || || | |||||| | || |||| || ||||| ||| Sbjct 2373903 GTGAGGAGACTGTACATTTCAGAGTGTCTGTTTTCCGTGGCATTTTGAAAGCCATAGAAA 2373962 Query 13493 CATCTAGCCTCTGATACCTGAACTTC 13518 || | || |||| | ||||||||| Sbjct 2373963 CAGCGGGCTTCTGTGATCTGAACTTC 2373988 >seq28 Length=26224161 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 21882818 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATAAGACCTCTTTTCT 21882759 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | |||||| ||||||||||| || ||||| || || ||||||||||| || ||||| | Sbjct 21882758 TTAGCCAAAAAATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 21882699 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 21882698 CCACCACCCTTTCCCC 21882683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430914930378690